mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 15:37:32 +08:00
John Chilton
52 lines
2.3 KiB
XML
52 lines
2.3 KiB
XML
<?xml version="1.0"?>
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<tool id="send_to_cloud" name="Send to cloud" version="0.1.0" workflow_compatible="false">
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<!--
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<requirements>
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<requirement type="package" version="0.3.3">cloudbridge</requirement>
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</requirements>
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-->
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<command><![CDATA[
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#try
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#set $authz_record=$__app__.authnz_manager.try_get_authz_config($__app__.obj.model.session, int($__user_id__), $__app__.security.decode_id($authz_id.__str__()))
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#set $credentials_file = $__app__.authnz_manager.get_cloud_access_credentials_in_file($__app__.config.new_file_path, $authz_record, $__app__.obj.model.session, int($__user_id__))
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#except Exception as e:
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echo '$e' >&2
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#else
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python $__tool_directory__/send.py
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--provider=$authz_record.provider
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--filename=$filename
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--credentials_file=$credentials_file
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--bucket=$bucket
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--object_label=$filename.name.replace(" ", "_")
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--overwrite_existing=$overwrite_existing
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#end try
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]]></command>
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<inputs>
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<param name="filename" type="data" label="Datasets to be sent to a cloud-based storage:" />
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<param name="bucket" type="text" label="Bucket" />
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<param name="authz_id" type="text" label="Cloud Authorization ID" />
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<param name="object_label" type="text" hidden="true" label="Object Label" />
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<param name="overwrite_existing" type="boolean" label="Overwrite Existing" />
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</inputs>
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<outputs>
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<data name="output" type="data" hidden="false"/>
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</outputs>
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<help>
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**What it does**
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Send dataset(s) from Galaxy to cloud-based storage (e.g., AWS S3).
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Supply a name of the target bucket where the data will be sent along
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with an id for the desired cloud authorization. To get the list of Cloud
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Authorization IDs available for your account, visit `/api/cloud/authz`.
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**Remarks**
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This tool leverages OpenID Connect protocol and CloudAuthz (https://github.com/galaxyproject/cloudauthz)
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to access cloud-based resources without requiring user credentials.
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If selecting multiple datasets, make sure each dataset is named
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differently; otherwise, only one copy of the selected datasets will be
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copied.
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</help>
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</tool>
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