mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
John Chilton
b686182e13
Namely create_db.py,db_shell.py, and manage_db.py. Move duplicated code into lib/galaxy/model/orm/scripts.py - add unit tests. PEP-8 clean up of all 4 files. Add incoherent incoherent comment at top of manage_db.py. As a result of the code de-duplication create_db.py should be usable with the tool shed now. Will be refactoring lib/galaxy/model/orm/scripts.py to work with new tool shed install database - it will be good to have a place to test these and allow manage_db.py and clean_db.py to work immediately.
40 lines
1.2 KiB
Python
Executable File
40 lines
1.2 KiB
Python
Executable File
"""
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Creates the initial galaxy database schema using the settings defined in
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universe_wsgi.ini.
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This script is also wrapped by create_db.sh.
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.. note: pass '-c /location/to/your_config.ini' for non-standard ini file
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locations.
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.. note: if no database_connection is set in universe_wsgi.ini, the default,
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sqlite database will be constructed.
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Using the database_file setting in universe_wsgi.ini will create the file
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at the settings location (??)
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.. seealso: universe_wsgi.ini, specifically the settings: database_connection
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and database file
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"""
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import sys
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import os.path
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new_path = [ os.path.join( os.getcwd(), "lib" ) ]
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new_path.extend( sys.path[1:] ) # remove scripts/ from the path
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sys.path = new_path
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from galaxy.model.orm.scripts import get_config
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from galaxy.model.migrate.check import create_or_verify_database as create_db
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from galaxy.webapps.tool_shed.model.migrate.check import create_or_verify_database as create_tool_shed_db
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def invoke_create():
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config = get_config(sys.argv)
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if config['database'] == 'galaxy':
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create_db(config['db_url'], config['config_file'])
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elif config['database'] == 'tool_shed':
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create_tool_shed_db(config['db_url'])
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if __name__ == "__main__":
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invoke_create()
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