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https://github.com/galaxyproject/galaxy.git
synced 2026-10-16 15:45:04 +08:00
Nate Coraor
367ceae256
Do this by calling common_startup.sh prior to manage_db.sh in run_test_wrapper.sh. Will require a rebuild of the testing-base image. Also, have scripts in Galaxy root activate .venv if it exists.
33 lines
884 B
Bash
Executable File
33 lines
884 B
Bash
Executable File
#!/bin/sh
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cd `dirname $0`
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./scripts/common_startup.sh
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if [ -d .venv ];
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then
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printf "Activating virtualenv at %s/.venv\n" $(pwd)
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. .venv/bin/activate
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fi
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tool_shed=`./lib/tool_shed/scripts/bootstrap_tool_shed/parse_run_sh_args.sh $@`
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args=$@
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if [ $? -eq 0 ] ; then
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bash ./lib/tool_shed/scripts/bootstrap_tool_shed/bootstrap_tool_shed.sh $@
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args=`echo $@ | sed "s#-\?-bootstrap_from_tool_shed $tool_shed##"`
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fi
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if [ -z "$TOOL_SHED_CONFIG_FILE" ]; then
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if [ -f tool_shed_wsgi.ini ]; then
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TOOL_SHED_CONFIG_FILE=tool_shed_wsgi.ini
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elif [ -f config/tool_shed.ini ]; then
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TOOL_SHED_CONFIG_FILE=config/tool_shed.ini
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else
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TOOL_SHED_CONFIG_FILE=config/tool_shed.ini.sample
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fi
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export TOOL_SHED_CONFIG_FILE
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fi
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python ./scripts/paster.py serve $TOOL_SHED_CONFIG_FILE --pid-file=tool_shed_webapp.pid --log-file=tool_shed_webapp.log $args
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