mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-25 00:12:08 +08:00
John Chilton
c28260faf7
... tool shed integration will be more challenging, but this can be used for directly configured Galaxy tools and outlines a syntax that could be shared with a tool shed driven approach. The one tricky part is how to match workflow outputs to things to check. Right now it is based on the index of the output across the workflow. This is both difficult to determine and very brittle to workflow modifications - how to proceed - require annontation string to be setup? Modify workflow data model to all assigning names to outputs the way inputs havenames? At any rate this current syntax should be considered beta and may change - if it does Galaxy will not continue to support this syntax. To run the sample test execute the following test command: sh run_functional_tests.sh -workflow test-data/workflows/1.xml
67 lines
4.8 KiB
Bash
Executable File
67 lines
4.8 KiB
Bash
Executable File
#!/bin/sh
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# A good place to look for nose info: http://somethingaboutorange.com/mrl/projects/nose/
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rm -f run_functional_tests.log
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if [ ! $1 ]; then
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python ./scripts/functional_tests.py -v --with-nosehtml --html-report-file run_functional_tests.html --exclude="^get" functional
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elif [ $1 = 'help' ]; then
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echo "'run_functional_tests.sh' for testing all the tools in functional directory"
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echo "'run_functional_tests.sh aaa' for testing one test case of 'aaa' ('aaa' is the file name with path)"
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echo "'run_functional_tests.sh -id bbb' for testing one tool with id 'bbb' ('bbb' is the tool id)"
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echo "'run_functional_tests.sh -sid ccc' for testing one section with sid 'ccc' ('ccc' is the string after 'section::')"
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echo "'run_functional_tests.sh -list' for listing all the tool ids"
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echo "'run_functional_tests.sh -toolshed' for running all the test scripts in the ./test/tool_shed/functional directory"
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echo "'run_functional_tests.sh -toolshed testscriptname' for running one test script named testscriptname in the .test/tool_shed/functional directory"
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echo "'run_functional_tests.sh -workflow test.xml' for running a workflow test case as defined by supplied workflow xml test file"
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echo "'run_functional_tests.sh -framework' for running through example tool tests testing framework features in test/functional/tools"
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echo "'run_functional_tests.sh -framework -id toolid' for testing one framework tool (in test/functional/tools/) with id 'toolid'"
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elif [ $1 = '-id' ]; then
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python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$2 --with-nosehtml --html-report-file run_functional_tests.html
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elif [ $1 = '-sid' ]; then
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python ./scripts/functional_tests.py --with-nosehtml --html-report-file run_functional_tests.html -v `python tool_list.py $2`
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elif [ $1 = '-list' ]; then
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python tool_list.py
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echo "==========================================================================================================================================="
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echo "'run_functional_tests.sh -id bbb' for testing one tool with id 'bbb' ('bbb' is the tool id)"
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echo "'run_functional_tests.sh -sid ccc' for testing one section with sid 'ccc' ('ccc' is the string after 'section::')"
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elif [ $1 = '-migrated' ]; then
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if [ ! $2 ]; then
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python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -migrated
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elif [ $2 = '-id' ]; then
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# TODO: This option is not tested...
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python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$3 --with-nosehtml --html-report-file run_functional_tests.html -migrated
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else
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python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -migrated
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fi
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elif [ $1 = '-installed' ]; then
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if [ ! $2 ]; then
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python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -installed
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elif [ $2 = '-id' ]; then
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# TODO: This option is not tested...
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python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$3 --with-nosehtml --html-report-file run_functional_tests.html -installed
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else
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python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -installed
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fi
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elif [ $1 = '-toolshed' ]; then
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if [ ! $2 ]; then
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python ./test/tool_shed/functional_tests.py -v --with-nosehtml --html-report-file ./test/tool_shed/run_functional_tests.html ./test/tool_shed/functional
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else
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python ./test/tool_shed/functional_tests.py -v --with-nosehtml --html-report-file ./test/tool_shed/run_functional_tests.html $2
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fi
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elif [ $1 = '-workflow' ]; then
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python ./scripts/functional_tests.py -v functional.test_workflow:WorkflowTestCase --with-nosehtml --html-report-file ./test/tool_shed/run_functional_tests.html -workflow $2
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elif [ $1 = '-framework' ]; then
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if [ ! $2 ]; then
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python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -framework
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elif [ $2 = '-id' ]; then
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python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$3 --with-nosehtml --html-report-file run_functional_tests.html -framework
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else
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echo "Invalid test option selected, if -framework first argument to $0, optional second argument must be -id followed a tool id."
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fi
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else
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python ./scripts/functional_tests.py -v --with-nosehtml --html-report-file run_functional_tests.html $1
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fi
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echo "'run_functional_tests.sh help' for help"
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