Nate Coraor 6c39e132e7 Modernize sorter (sort1) tool: ...

- Don't use shell, pipe with subprocess.PIPE instead
- Switch optparse for argparse
- Add missing coreutils requirement for `sort` command
- Change Python requirement from 2.7 to 3.8

2021-10-01 12:47:14 -04:00

..

data_export

Tweak tool options

2021-08-25 18:03:19 +03:00

data_source

Use ncbi_genome_dataset.zip format

2021-09-13 12:05:53 +02:00

evolution

Make str.join()s more efficient

2020-01-23 11:06:32 +00:00

expression_tools

Implement pick_values expression tool...

2020-11-17 11:46:36 +01:00

extract

Open input file in read mode

2021-05-21 18:15:14 +02:00

filters

Modernize sorter (sort1) tool:

2021-10-01 12:47:14 -04:00

interactive

Add tag version

2021-09-09 11:36:13 +02:00

maf

Fix all E203, E741 and W504 flake8 errors

2021-01-18 10:35:41 +00:00

meme

Make str.join()s more efficient

2020-01-23 11:06:32 +00:00

metag_tools

Rev mypy.

2021-04-23 14:49:53 -04:00

next_gen_conversion

Rev mypy.

2021-04-23 14:49:53 -04:00

ngs_simulation

Make str.join()s more efficient

2020-01-23 11:06:32 +00:00

phenotype_association

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

plotting

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

solid_tools

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

sr_assembly

remove stop_err

2020-10-13 09:55:36 +02:00

sr_mapping

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

stats

Rev mypy.

2021-04-23 14:49:53 -04:00

visualization

Remove deprecated `interpreter attribute from tools <command>`

2020-03-05 12:53:09 +01:00

__init__.py

Rev mypy.

2021-04-23 14:49:53 -04:00