mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 22:06:53 +08:00
115 lines
2.6 KiB
TOML
115 lines
2.6 KiB
TOML
[tool.poetry]
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name = "galaxy"
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version = "21.01"
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description = "Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research."
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authors = ["Galaxy Contributors"]
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license = "AFL-3.0"
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readme = "README.rst"
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homepage = "https://galaxyproject.org/"
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repository = "https://github.com/galaxyproject/galaxy/"
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documentation = "https://docs.galaxyproject.org/"
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[[tool.poetry.source]]
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name = "galaxyproject"
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url = "https://wheels.galaxyproject.org/simple"
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[tool.poetry.dependencies]
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aiofiles = "*"
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async-generator = {version = "*", python = "~3.6"}
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async-exit-stack = {version = "*", python = "~3.6"}
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Babel = "*"
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bdbag = "*"
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Beaker = "1.11.0"
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bioblend = "*"
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bleach = "*"
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boltons = "*"
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boto = "*"
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bx-python = "*"
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celery = "*"
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Cheetah3 = "*"
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cloudauthz = "==0.6.0"
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cloudbridge = "*"
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contextvars = {version = "*", python = "~3.6"}
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circus = "*"
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cwltool = "==3.0.20201109103151"
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dictobj = "*"
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docutils = "!=0.17, !=0.17.1"
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edam-ontology = "*"
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Fabric3 = "*"
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fastapi = ">=0.65.2"
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fastapi-utils = "*"
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fs = "*"
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future = "*"
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galaxy_sequence_utils = "*"
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gxformat2 = "*"
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h5py = "!=2.7.0, !=2.7.1"
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isa-rwval = "*"
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kombu = "*"
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lagom = "<1.2.1" # maximum recursion depth exceeded (on functional_tests run)
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Mako = "*"
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Markdown = "*"
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MarkupSafe = "*"
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Mercurial = "*"
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mrcfile = "*"
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nodeenv = "*"
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nose = "*"
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numpy = "*"
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paramiko = "*"
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Parsley = "*"
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Paste = "*"
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psutil = "*"
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pulsar-galaxy-lib = ">=0.14.9"
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pycryptodome = "*"
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pykwalify = "*"
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pyparsing = "*"
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pysam = "*"
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python = "^3.6"
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pyuwsgi = "*"
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PyYAML = "*"
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refgenconf = ">=0.12.0"
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requests = "*"
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Routes = "*"
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social-auth-core = {version = "==3.3.0", extras = ["openidconnect"]}
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sortedcontainers = "*"
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SQLAlchemy = ">=1.4.20,<2"
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sqlalchemy-migrate = "*"
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sqlitedict = "*"
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sqlparse = "*"
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starlette = "*"
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starlette-context = {version = "*", python = ">=3.7"}
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svgwrite = "*"
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tifffile = "<=2020.9.3" # Last version compatible with python 3.6
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uvicorn = "*"
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WebOb = "*"
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Whoosh = "*"
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zipstream-new = "*"
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[tool.poetry.dev-dependencies]
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fluent-logger = "*"
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httpx = "*"
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gunicorn = "*"
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lxml = "!=4.2.2"
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markdown-it-reporter = "*"
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NoseHTML = "*"
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pygithub = ">=1.54.1" # prevent downgrade (depends on pyjwt(<2.0); pyjwt auto-upgrade to 2.0.1 causes pygithub downgrade to 1.53)
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pytest = "*"
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pytest-asyncio = "*"
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pytest-cov = "*"
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pytest-html = "*"
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python-irodsclient = "*"
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pytest-json-report = "*"
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pytest-mock = "*"
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pytest-pythonpath = "*"
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pytest-postgresql = "*"
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pytest-shard = "*"
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recommonmark = "*"
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responses = "*"
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selenium = "*"
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Sphinx = "*"
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sphinx_markdown_tables = "*"
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sphinx_rtd_theme = "*"
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statsd = "*"
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testfixtures = "*"
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twill = "*"
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watchdog = "*"
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