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Gianmauro CuccuruandMarius van den Beek
3a8fda196f
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
56 lines
1.8 KiB
XML
56 lines
1.8 KiB
XML
<tool id="interactive_tool_metashark" tool_type="interactive" name="metashark" version="1.7" profile="22.01">
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<description>Metadata Shiny Automated Resource and Knowledge</description>
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<requirements>
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<container type="docker">eliearnaud/metashark:1.7.0</container>
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</requirements>
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<entry_points>
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<entry_point name="metashark visualisation" requires_domain="True">
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<port>3838</port>
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<url>/</url>
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</entry_point>
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</entry_points>
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<command><![CDATA[
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mkdir -p /srv/shiny-server/data/ &&
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cp '$infile' /srv/shiny-server/data/inputdata.txt &&
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R -e "options('shiny.port'=3838,shiny.host='0.0.0.0');MetaShARK::runMetashark()"
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]]>
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</command>
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<inputs>
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<param name="infile" type="data" multiple="true" format="tabular,csv" label="Input biodiversity data file(s)"/>
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</inputs>
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<outputs>
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<data name="outfile" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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<![CDATA[
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`MetaShARK <https://github.com/earnaud/MetaShARK-v2>`_ is a R Shiny App to automate metadata creation in Ecological Metadata Language (E>
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Example input file (csv ot tabular)::
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"ID" "x" "y" "test"
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01 -60.291838 46.328137 2
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02 -114.58927 35.022485 3
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03 -93.37406 30.00586 4
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04 -79.336288 43.682218 5
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05 -109.156024 31.904185 2
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06 -71.098031 42.297408 9
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07 -110.927215 32.18203 12
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]]>
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</help>
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<citations>
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<citation type="bibtex">@misc{githubsurvey2018,
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author = {Elie Arnaud},
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title = {{Metadata Shiny Automated Resource and Knowledge}},
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publisher = {Github},
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url = {https://github.com/earnaud/MetaShARK-v2}
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}
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}</citation>
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</citations>
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</tool>
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