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34 lines
1.0 KiB
Python
Executable File
34 lines
1.0 KiB
Python
Executable File
#!/usr/bin/env python
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"""
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Execute workflows from the command line.
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Example calls:
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python workflow_execute.py <api_key> <galaxy_url>/api/workflows f2db41e1fa331b3e 'Test API History' '38=ldda=0qr350234d2d192f'
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python workflow_execute.py <api_key> <galaxy_url>/api/workflows f2db41e1fa331b3e 'hist_id=a912e9e5d84530d4' '38=hda=03501d7626bd192f'
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"""
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import os
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import sys
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from common import submit
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def main():
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try:
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data = {}
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data["workflow_id"] = sys.argv[3]
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data["history"] = sys.argv[4]
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data["ds_map"] = {}
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# DBTODO If only one input is given, don't require a step
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# mapping, just use it for everything?
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for v in sys.argv[5:]:
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step, src, ds_id = v.split("=")
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data["ds_map"][step] = {"src": src, "id": ds_id}
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except IndexError:
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print(f"usage: {os.path.basename(sys.argv[0])} key url workflow_id history step=src=dataset_id")
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sys.exit(1)
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submit(sys.argv[1], sys.argv[2], data)
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if __name__ == "__main__":
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main()
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