Daniel Blankenberg e835df2063 Enhance change_format tag of tool outputs to allow the use of Grouping Constructs. Objects can be accessed using the previously accepted bare name or using the same style as used within templates (e.g. the tool command tag). ...

e.g.

  <outputs>
    <data name="output_file" format="fastqsanger">
      <change_format>
        <when input="input_type" value="cssanger" format="fastqcssanger" />
        <when input="options_type.output_type" value="solexa" format="fastqsolexa" />
        <when input="options_type.output_type" value="illumina" format="fastqillumina" />
        <when input="options_type.output_type" value="sanger" format="fastqsanger" />
        <when input="options_type.output_type" value="cssanger" format="fastqcssanger" />
      </change_format>
    </data>
  </outputs>

or

  <outputs>
    <data name="output_file" format="fastqsanger">
      <change_format>
        <when input="$input_type" value="cssanger" format="fastqcssanger" />
        <when input="${options_type.output_type}" value="solexa" format="fastqsolexa" />
        <when input="${options_type.output_type}" value="illumina" format="fastqillumina" />
        <when input="${options_type.output_type}" value="sanger" format="fastqsanger" />
        <when input="${options_type.output_type}" value="cssanger" format="fastqcssanger" />
      </change_format>
    </data>
  </outputs>

where 'options_type' is the name of the grouping parameter and 'output_type' is the name of a parameter found in this group and 'input_type' is the name of a parameter not found within a group.

2010-03-03 14:30:32 -05:00

..

galaxy

Enhance change_format tag of tool outputs to allow the use of Grouping Constructs. Objects can be accessed using the previously accepted bare name or using the same style as used within templates (e.g. the tool command tag).

2010-03-03 14:30:32 -05:00

galaxy_utils

Change color space FASTA file type from fastqsolid to fastqcssanger.

2010-03-02 10:47:23 -05:00

fpconst.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

log_tempfile.py

Since tempfiles seem to occasionally be left behind, allow logging of

2008-12-23 13:28:27 -05:00

mimeparse.py

Collapsed changeset: Trackster plugged into galaxy with behind-the-scenes indexing of Wiggle, coverage and interval datasets.

2009-03-11 00:29:01 +00:00

pkg_resources.py

Update pkg_resources to 0.6c8 to fix the cygwin non-executable dll

2008-04-14 19:25:35 +00:00

psyco_full.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00