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55 lines
1.8 KiB
XML
55 lines
1.8 KiB
XML
<tool id="cat1" name="Concatenate queries">
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<description>tail-to-head</description>
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<command>cat $input1 $input2 > $out_file1</command>
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<inputs>
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<param name="input1" type="data" label="Concatenate Query1"/>
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<param name="input2" type="data" label="with Query2" />
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</inputs>
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<outputs>
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<data name="out_file1" format="input" metadata_source="input1"/>
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</outputs>
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<tests>
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<test>
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<param name="input1" value="1.bed"/>
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<param name="input2" value="2.bed"/>
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<output name="out_file1" file="eq-cat.dat"/>
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</test>
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</tests>
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<help>
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.. class:: warningmark
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**WARNING:** Be careful not to concatenate queries of different kinds (e.g., sequences with intervals). This tool does not check if the two queries being concatenated are in the same format.
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-----
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**Syntax**
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Concatenate Query2 to the end of Query1, and print on the output file.
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-----
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**Example**
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- Query1::
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chrX 151087187 151087355 NM_000808_utr3_0_0_chrX_151087188_r 0 -
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chrX 151572400 151572481 NM_018558_utr3_8_0_chrX_151572401_f 0 +
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- Query2::
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chr1 151242630 151242955 NM_005416_utr3_2_0_chr1_151242631_f 0 +
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chr1 151271715 151271999 NM_003125_utr3_1_0_chr1_151271716_f 0 +
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chr1 151278832 151279227 NM_006945_utr3_0_0_chr1_151278833_r 0 -
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- Concatenate Query2 to the end of Query1. The result is::
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chrX 151087187 151087355 NM_000808_utr3_0_0_chrX_151087188_r 0 -
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chrX 151572400 151572481 NM_018558_utr3_8_0_chrX_151572401_f 0 +
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chr1 151242630 151242955 NM_005416_utr3_2_0_chr1_151242631_f 0 +
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chr1 151271715 151271999 NM_003125_utr3_1_0_chr1_151271716_f 0 +
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chr1 151278832 151279227 NM_006945_utr3_0_0_chr1_151278833_r 0 -
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</help>
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</tool>
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