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Dannon Baker
28 lines
1.2 KiB
Plaintext
28 lines
1.2 KiB
Plaintext
#This is a sample file distributed with Galaxy that is used by the
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#liftOver tools. The liftOver.loc file has this format (white space
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#characters are TAB characters):
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#
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#<FromSpecies> <ToSpecies> <PathToChainFile>
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#
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#So, for example, if you had the chain file to convert from anoCar1 to galGal3
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#located at /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain,
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#then the liftOver.loc entry would look like this:
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#
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#anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain
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#
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#and your /depot/data2/galaxy/anoCar1/liftOver directory would
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#contain all of your "chain" files (e.g.):
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#
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#-rw-rw-r-- 1 gua110 galaxy 24046079 2008-01-16 14:20 anoCar1ToGalGal3.over.chain
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#-rw-rw-r-- 1 gua110 galaxy 13216668 2008-01-16 14:20 anoCar1ToGasAcu1.over.chain
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#-rw-rw-r-- 1 gua110 galaxy 29597067 2008-01-16 14:20 anoCar1ToHg18.over.chain
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#...etc...
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#
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#Your liftOver.loc file should include an entry per line for each build you can
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#convert. For example:
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#
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#anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain
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#anoCar1 gasAcu1 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGasAcu1.over.chain
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#anoCar1 hg18 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain
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#...etc...
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