Nicola Soranzo 0f70c68fd9 Migrate to MyST-Parser for Markdown docs ...

replacing deprecated recommonmark.

Fix https://github.com/galaxyproject/galaxy/issues/13005 .

Also:
- Drop not very useful ``doc/source/dev/file_upload.md`` .
- Small doc and link fixes.

2023-03-27 15:01:27 +01:00

..

api_guidelines.rst

Apply suggestions from code review

2021-01-13 18:19:29 -05:00

build_a_job_runner.rst

small change to job runner docs

2022-11-08 11:47:09 +01:00

data_managers_schematic_overview.png

Add remove operation to data managers and document data managers in regular Galaxy docs.

2019-06-28 20:02:37 +02:00

data_managers.rst

deprecate data manager version

2021-07-14 15:24:38 +02:00

data_types.md

Migrate to MyST-Parser for Markdown docs

2023-03-27 15:01:27 +01:00

debugging_galaxy_slurm.md

Doc fixes

2022-08-15 19:15:02 +01:00

debugging_galaxy.md

Migrate to MyST-Parser for Markdown docs

2023-03-27 15:01:27 +01:00

debugging_tests.md

Document how to profile memory use in tests

2022-09-27 03:34:55 +01:00

faq.rst

Fix documentation more, spread data managers documentation over multiple lines so it's easier to read when editing.

2019-08-24 11:56:47 +02:00

finding_and_improving_slow_code.rst

Fix documentation more, spread data managers documentation over multiple lines so it's easier to read when editing.

2019-08-24 11:56:47 +02:00

index.rst

Migrate to MyST-Parser for Markdown docs

2023-03-27 15:01:27 +01:00

inherit.png

Add and use local images for build runner doc

2016-10-24 19:40:42 +01:00

interactive_environments.rst

Doc fixes

2022-08-15 19:15:02 +01:00

queue_b.png

Add and use local images for build runner doc

2016-10-24 19:40:42 +01:00

queue.png

Add and use local images for build runner doc

2016-10-24 19:40:42 +01:00

run_tests_help.txt

Update run_tests_help w/ client targets

2023-01-25 09:13:35 -05:00

runner_diag.png

Add and use local images for build runner doc

2016-10-24 19:40:42 +01:00

select_python_interpreter.png

Add a note to get Python extension and set interpreter

2021-07-06 14:07:05 +02:00

tests.png

Added doc pages for debugging tests and Galaxy.

2020-04-24 16:27:43 -04:00

translating.rst

Doc fixes

2022-08-15 19:15:02 +01:00

writing_tests.md

Migrate to MyST-Parser for Markdown docs

2023-03-27 15:01:27 +01:00