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38 lines
858 B
XML
38 lines
858 B
XML
<tool id="substitutions1" name="Fetch substitutions " version="1.0.0">
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<description> from pairwise alignments</description>
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<command interpreter="python">
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substitutions.py
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$input
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$out_file1
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</command>
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<inputs>
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<param format="maf" name="input" type="data" label="Select pair-wise alignment data"/>
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</inputs>
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<outputs>
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<data format="tabular" name="out_file1" metadata_source="input"/>
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</outputs>
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<tests>
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<test>
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<param name="input" value="Interval2Maf_pairwise_out.maf"/>
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<output name="out_file1" file="subs.out"/>
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</test>
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</tests>
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<help>
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.. class:: infomark
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**What it does**
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This tool takes a pairwise MAF file as input and fetches substitutions per alignment block.
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-----
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.. class:: warningmark
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**Note**
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Any block/s not containing exactly two sequences, will be omitted.
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</help>
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</tool> |