Daniel Blankenberg 5b8845fae6 Make additional files output by SamToFastq when using read groups be fastqsanger format instead of just fastq.

2012-01-25 12:11:27 -05:00

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picard_AddOrReplaceReadGroups.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

picard_BamIndexStats.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

picard_FastqToSam.xml

Add picard_FastqToSam.xml and picard_SamToFastq.xml to tool_conf.xml.main.

2011-11-21 08:52:13 -05:00

picard_MarkDuplicates.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

picard_ReorderSam.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

picard_ReplaceSamHeader.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

picard_SamToFastq_wrapper.py

Make additional files output by SamToFastq when using read groups be fastqsanger format instead of just fastq.

2012-01-25 12:11:27 -05:00

picard_SamToFastq.xml

Enhance Picard SamToFastq to allow read group aware processing.

2012-01-24 15:03:35 -05:00

picard_wrapper.py

Merged in jmchilton/umn-galaxy-central (pull request #28)

2012-01-23 14:44:50 -05:00

rgPicardASMetrics.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

rgPicardFixMate.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

rgPicardGCBiasMetrics.xml

Have rgPicardGCBiasMetrics.xml use fields.path approach instead of directly filtering on data table.

2011-11-22 11:56:53 -05:00

rgPicardHsMetrics.xml

Fixed composite download zip file failure related to trying to delete a file whose file handle was needed as the return value

2012-01-19 12:01:20 +11:00

rgPicardInsertSize.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

rgPicardLibComplexity.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00

rgPicardMarkDups.xml

Bumped ALL picard tool versions and made them uniformly 1.56.0 to reflect the current picard tools version Nate's about to unleash.

2011-11-12 04:25:19 +11:00