galaxy

Fix for loading tools from an installed tool shed repository into the tool panel outside of any sections.

2012-02-07 16:20:48 -05:00

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

On edit attributes page, make the info field a textarea. Also HTML escape the contents of data_annotation and info textareas.

2012-01-18 14:00:38 -05:00

external_services

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

genetrack

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

history

Enhance the process used by objects to retrieve tools from the tools_by_id dictionary. This allows for workflows that were built with tools originally included in the Galaxy distribution but later moved to the tool shed to function correctly if the tools are installed from the tool shed using Galaxy's update manager. In addition, workflows that were built using locally developed and hosted tools, but the tools were included in a tool shed repository, removed from the local instance, and then installed from the tool shed to function correctly. This approach works for the rerun button on history items as well.

2012-01-17 14:31:06 -05:00

library

Change column Uploaded By to be the Data type of the library dataset when browsing a data library. Fixes issue #597 .

2011-12-02 15:19:37 -05:00

mobile

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

page

Rename toggle-contract to toggle in CSS so that CSS class name matches icon file name.

2011-11-15 15:29:25 -05:00

requests

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

root

Fix initialization of tags and annotations in history datasets.

2012-02-16 14:05:03 -05:00

tracks

Trackster: move 'more rows' icon from tile level to track level and fix bug in displaying visualization name. Pack scripts.

2012-02-20 11:58:13 -05:00

user

Changed the default new user mailing list from galaxy-user to galaxy-announce, which is a much lower volume. Also added text to link to wiki page with all mailing lists.

2012-02-01 21:25:41 -08:00

visualization

Trackster: (a) simplify nav bar width control; (b) fix embedded visualizations; (c) pack script.

2012-01-19 11:48:56 -05:00

webapps

Add a new grid to view the tool version lineage by tool id (parent/child ordered) for any tool that was ever used in the local Galaxy instance. Tool ids in this grid that are associated with tools currently loaded in the tool panel are highlighted in green and are click-able, displaying the tool. Eliminate the mappers for determining lineage, and use methods instead as the mappers were problematic.

2012-02-06 15:22:56 -05:00

workflow

Workflows: Add the ability to remove workflows that have been shared with you.

2012-02-02 14:53:34 -05:00

base_panels.mako

Cleaner fix for 5828:e34b1108f7f8

2011-07-25 20:55:42 -04:00

base.mako

Tools: Add new LibraryDataset tool parameter to expose LDDAs to tools. Use trackster's modal popup interface for item selection. Add new InputWrapper that exposes LDDA templates as well.

2011-07-18 21:56:23 -04:00

community_rating.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

display_base.mako

Trackster: (a) simplify nav bar width control; (b) fix embedded visualizations; (c) pack script.

2012-01-19 11:48:56 -05:00

display_common.mako

Make purged histories visible in the history list grid, make any history viewable from the grid.

2011-10-10 15:45:31 -04:00

embed_base.mako

Rename toggle-contract to toggle in CSS so that CSS class name matches icon file name.

2011-11-15 15:29:25 -05:00

export_base.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

form.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

grid_base_async.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

grid_base.mako

Add the ability to search for workflows by name in a Galalxy tool shed, either within the tool shed itself or in a local Galaxy instance configured to communicate with the tool shed.

2011-10-27 13:26:43 -04:00

grid_common.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

ind_share_base.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

message.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

no_access.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

panels.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

sharing_base.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

show_params.mako

Missing template changes from the last commit.

2011-12-06 11:41:32 -05:00

tagging_common.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

tool_executed.mako

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

tool_form.mako

fix tool_form.mako js typo affecting "drill_down" input

2011-11-16 17:25:26 -05:00