mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
54 lines
1.7 KiB
XML
54 lines
1.7 KiB
XML
<tool id="scatterplot_rpy" name="Scatterplot">
|
|
<description>of two numeric columns</description>
|
|
<command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command>
|
|
<inputs>
|
|
<param format="text" name="input" type="data" label="Dataset" help="Query missing? See TIP below"/>
|
|
<param name="col1" size="4" type="integer" value="5" label="Column for x axis"/>
|
|
<param name="col2" size="4" type="integer" value="6" label="Column for y axis"/>
|
|
<param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/>
|
|
<param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/>
|
|
<param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/>
|
|
</inputs>
|
|
<outputs>
|
|
<data format="pdf" name="out_file1" />
|
|
</outputs>
|
|
<help>
|
|
|
|
.. class:: infomark
|
|
|
|
**TIP:** If your data is not TAB delimited, use *Edit Queries->Convert characters*
|
|
|
|
-----
|
|
|
|
**Syntax**
|
|
|
|
A scatter plot reveals relationships or association between two variables. This tool creates a simple scatterplot between two variables of a selected Query.
|
|
|
|
- **Column for x axis** and **Column for x axis** columns are referenced with a number, it start with 1.
|
|
- **Plot title** The scatterplot title
|
|
- **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot.
|
|
|
|
-----
|
|
|
|
**Example**
|
|
|
|
- Input file::
|
|
|
|
1 68 4.1
|
|
2 71 4.6
|
|
3 62 3.8
|
|
4 75 4.4
|
|
5 58 3.2
|
|
6 60 3.1
|
|
7 67 3.8
|
|
8 68 4.1
|
|
9 71 4.3
|
|
10 69 3.7
|
|
|
|
- Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset.
|
|
|
|
.. image:: ../static/images/scatterplot.png
|
|
|
|
</help>
|
|
</tool>
|