mirror of
https://github.com/galaxyproject/galaxy.git
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John Davis
ad3ea80e74
galaxy-tool-util-models was listed as an unversioned dependency in
galaxy-schema, galaxy-tool-util, and galaxy-tool-shed-schema. This
caused pip to leave it at a stale version when upgrading an existing
virtualenv, because the already-installed version satisfied the loose
(unconstrained) requirement.
The symptom was ImportError failures at job execution time — e.g.:
ImportError: cannot import name 'AnySafeValidatorModel' from
'galaxy.tool_util_models.parameter_validators'
— where galaxy-util (at the new version) referenced a symbol that
didn't exist in the older galaxy-tool-util-models still present in
the venv.
Fix: add a >=26.0 lower bound in each dependent package so pip is
forced to upgrade galaxy-tool-util-models when installing any of
these packages at 26.0 or later.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
52 lines
1014 B
INI
52 lines
1014 B
INI
[metadata]
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author = Galaxy Project and Community
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author_email = galaxy-committers@lists.galaxyproject.org
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description = Galaxy tool and tool dependency utilities
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license = MIT
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license_files =
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LICENSE
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long_description = file: README.rst, HISTORY.rst
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long_description_content_type = text/x-rst
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name = galaxy-tool-util
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url = https://github.com/galaxyproject/galaxy
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version = 26.0.2.dev0
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[options]
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include_package_data = True
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install_requires =
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galaxy-tool-util-models>=26.0
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galaxy-util[template,image-util]>=22.1
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conda-package-streaming
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lxml!=4.2.2
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MarkupSafe
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packaging
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pydantic>=2.7.4
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PyYAML
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requests
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sortedcontainers
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typing-extensions
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packages = find:
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python_requires = >=3.8
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[options.extras_require]
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cwl =
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cwl-utils
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cwltool>=3.1.20230624081518
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mulled =
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jinja2
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Whoosh
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edam =
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edam-ontology
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extended-assertions =
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numpy
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pysam
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pillow
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tifffile
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test =
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Beaker
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pytest
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pytest-mock
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[options.packages.find]
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exclude =
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tests*
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