Nicola Soranzo 4768d3d1db Drop Python helper script from sort1 tool ...

Also:
- Incidentally address the deprecation of the `argparse.FileType` type
  converter in Python 3.14 , see
  https://docs.python.org/3.14/whatsnew/3.14.html#deprecated
  https://github.com/galaxyproject/galaxy/issues/16854
- Drop the now unnecessary Python requirement.
- Use CDATA.

2025-09-08 23:47:46 +01:00

..

data_export

change description of the export tool

2025-04-05 22:25:22 +02:00

data_source

Merge branch 'release_24.2' into release_25.0

2025-08-29 19:59:33 +02:00

expression_tools

Fix typos

2022-09-09 17:20:23 +01:00

extract

Apply black to tools as well

2022-02-03 09:12:13 -05:00

filters

Drop Python helper script from sort1 tool

2025-09-08 23:47:46 +01:00

interactive

Add icons for many ITs

2025-05-12 10:07:25 -04:00

maf

Fix maf_thread_for_species.py

2023-11-08 10:45:11 +01:00

meme

Remove outdated fimo wrapper and galaxy-sequence-utils dependency

2024-10-04 12:33:26 +01:00

metag_tools

Apply black to tools as well

2022-02-03 09:12:13 -05:00

next_gen_conversion

Fix or ignore additional unreachable code

2024-02-01 10:32:04 +01:00

ngs_simulation

Apply black to tools as well

2022-02-03 09:12:13 -05:00

phenotype_association

Fix error or loading internal tool SIFT

2024-06-10 10:31:01 +02:00

plotting

Apply black to tools as well

2022-02-03 09:12:13 -05:00

solid_tools

Format Python code with black 23.1.0

2023-02-01 23:51:03 +00:00

sr_assembly

Apply black to tools as well

2022-02-03 09:12:13 -05:00

sr_mapping

chore: fix typos

2023-10-13 16:29:27 +02:00

stats

Enable flake8-comprehensions ruff rules

2024-03-09 19:11:20 +00:00

__init__.py

Rev mypy.

2021-04-23 14:49:53 -04:00