opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-10-13 00:44:55 +08:00
Code Issues Packages Projects Releases Wiki Activity
Files
a775ca8b56d46bdbbf4aef8f988e855ee883086e
galaxy/test/integration
T
History
davelopez 6f2b4ff559 Move short_term_storage related classes to its own path 
The ShortTermStorageManager and related classes should live in their own package eventually and not within galaxy.web nor galaxy.managers as the short term storage microservices it's fairly independent and has way less dependencies than those other packages.
2023-11-30 17:01:29 +01:00
..
chained_dyndest_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
cloudauthz
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
delay_rules
…
job_resource_rules
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
mock_biotools_content/data
Parse edam operation and topic data from bio.tools if available.
2021-09-07 14:29:38 -04:00
objectstore
use cache_updated_data=True for s3 tests
2023-11-16 13:22:09 -05:00
objectstore_selection_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
panel_views_1
Exclude multiple_versions from test_global_filters_on_integrated_panel
2023-11-16 15:08:21 +01:00
resubmission_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
webdav
…
__init__.py
…
chained_dyndest_job_conf.xml
…
conftest.py
Enable celery in API, Selenium, Integration tests
2022-05-25 19:46:47 +02:00
delay_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
dockerized_job_conf.yml
Test that tmp_dir gets mounted correctly
2023-08-09 15:34:39 +02:00
dummy_job_resource_parameters.xml
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
embedded_pulsar_docker_job_conf.yml
Drop more uWSGI legacy things
2022-03-15 21:32:00 +01:00
embedded_pulsar_job_conf.yml
Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml
2023-11-21 17:44:37 +01:00
embedded_pulsar_metadata_extended_job_conf.yml
Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml
2023-11-21 17:44:37 +01:00
embedded_pulsar_metadata_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_singularity_job_conf.yml
Add `--no-mount tmp` for singularity destination in tests
2023-02-28 18:49:30 +00:00
fallback_container_resolver.yml
add test for loading a per destination container resolver config
2023-04-02 10:39:44 +02:00
file_sources_conf_remote_files.yml
Add url_regex matching for DRS filesources and add integration test
2023-06-14 19:27:31 +05:30
file_sources_conf_vault.yml
Add new secret type to user preferences that is not sent to client
2021-12-01 10:48:36 +05:30
file_sources_conf.yml
Restore original filename for file_source_conf_webdav.yml
2023-06-14 19:27:31 +05:30
handler_template_job_conf.xml
…
io_injection_job_conf.yml
…
job_resource_error_recovery_job_conf.yml
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
refgenie.yml
…
resubmission_default_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_dynamic_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_resource_parameters_conf.xml
…
resubmission_pulsar_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_runners.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
resubmission_small_memory_job_conf.xml
…
resubmission_small_memory_resubmission_to_large_job_conf.xml
…
resubmission_tool_detected_always_error_job_conf.xml
…
resubmission_tool_detected_resubmit_job_conf.xml
…
sets_tmp_dir_expression_job_conf.xml
…
sets_tmp_dir_to_true_job_conf.xml
…
simple_job_conf.xml
…
singularity_job_conf.yml
require_container in tests
2023-06-20 10:28:21 +02:00
test_apache_nginx_sendfile.py
Merge remote-tracking branch 'upstream/release_22.05' into dev
2022-11-16 12:07:04 +01:00
test_async_downloads.py
Replace `unittest.TestCase` in API, framework, performance, Selenium and ToolShed tests
2022-11-07 15:44:01 +00:00
test_celery_tasks.py
Move short_term_storage related classes to its own path
2023-11-30 17:01:29 +01:00
test_celery_user_rate_limit.py
Python 3.8 as new minimum version
2023-11-26 18:34:09 +00:00
test_chained_dynamic_destinations.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_cli_runners.py
Update and apply ruff refactorings
2023-08-09 17:14:07 +02:00
test_coexecution.py
Fixes for Pulsar 0.15.0.
2023-02-09 09:51:27 -05:00
test_config_options_users.py
Fix Integeration typo
2022-11-23 01:20:00 +00:00
test_config_schema.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_configuration_decode.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_container_resolvers.py
Apply suggestions from code review
2023-06-20 10:30:19 +02:00
test_containerized_jobs.py
follow-up restucture integration tests
2023-06-14 15:32:18 +01:00
test_data_manager_refgenie.py
Even more typing
2022-11-28 04:50:00 +00:00
test_data_manager.py
Even more typing
2022-11-28 04:50:00 +00:00
test_dataset_copy_metadata_files.py
Fix copying metadata to copied job outputs
2023-11-10 18:03:45 +01:00
test_datatype_upload.py
Fix test_objectstore_datatype_upload.py . More type annotations
2022-11-23 01:19:59 +00:00
test_default_permissions.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_dynamic_edam_loading.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_edam_toolbox.py
change api/tool_panels from dict of views to dict containing
2023-10-26 12:50:31 -05:00
test_extended_metadata_mapping.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_extended_metadata_outputs_to_working_directory.py
Fix and extend extended metadata outputs to working directory tests
2023-09-12 13:07:10 +02:00
test_extended_metadata.py
Fix and extend extended metadata outputs to working directory tests
2023-09-12 13:07:10 +02:00
test_fail_job_tool_unavailable.py
use history_id fixture instead of instance variable with the same name
2022-11-23 01:19:59 +00:00
test_fluent_metrics.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_flush_per_n_datasets.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_galaxy_interactor.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_genomes.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_handler_assignment_methods.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_history_archiving.py
Increase test coverage + fixes
2023-06-19 09:44:17 +02:00
test_history_import_export.py
Refactor history archival testing related actions
2023-06-19 09:39:55 +02:00
test_interactivetools_api.py
Removed "interactivetools_shorten_url"
2023-11-15 12:54:14 +01:00
test_job_environments.py
Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml
2023-11-21 17:44:37 +01:00
test_job_files.py
Merge remote-tracking branch 'upstream/release_23.1' into dev
2023-11-28 22:49:01 -05:00
test_job_outputs_to_working_directory.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_job_recovery.py
Even more typing
2022-11-28 04:50:00 +00:00
test_job_resource_error_recovery.py
Add integration test for ignoring invalid resource request in tool state
2023-08-22 15:29:03 +02:00
test_job_resubmission.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_kubernetes_runner.py
Python 3.8 as new minimum version
2023-11-26 18:34:09 +00:00
test_legacy_store_by.py
Merge `store_by="id"` tests
2023-11-22 18:55:03 +01:00
test_local_job_cancellation.py
Fix SA20 syntax in test_local_job_cancel., refactor
2023-07-21 13:04:23 -04:00
test_materialize_dataset_instance_tasks.py
Fix test failures
2023-02-09 18:14:18 +05:30
test_max_discovered_files.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_metadata_strategy.py
Test case to demonstrate disk usage update for work dir outputs is broken with celery_extended.
2023-05-18 16:01:14 +02:00
test_model_store_scripts.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_notifications.py
Add test for broadcasts action links
2023-11-28 19:34:07 +01:00
test_page_revision_json_encoding.py
Fix new errors from ruff 0.0.279
2023-07-23 16:25:27 +01:00
test_panel_views.py
Merge branch 'release_23.1' into dev
2023-11-21 09:36:51 +01:00
test_prefix_handling.py
Various fixes to path prefix handling
2023-05-05 16:38:17 +02:00
test_pulsar_embedded_containers.py
Use `history_id` fixture instead of instance attribute. More type annotations
2022-11-23 04:04:51 +00:00
test_pulsar_embedded_copy_working.py
…
test_pulsar_embedded_extended_metadata.py
Fix tool stdio on pulsar and implement job stdio
2023-04-06 17:07:00 +02:00
test_pulsar_embedded_mq.py
Extend pulsar test cases with composite_output_tests
2023-08-24 10:44:40 +02:00
test_pulsar_embedded_remote_metadata.py
Fix tool stdio on pulsar and implement job stdio
2023-04-06 17:07:00 +02:00
test_pulsar_embedded.py
Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml
2023-11-21 17:44:37 +01:00
test_purge_datasets.py
Attempt to fix typing issues in integration tests.
2023-05-24 13:20:21 -04:00
test_quota.py
Implement quota tracking options per ObjectStore.
2023-02-19 10:33:21 -05:00
test_recalculate_user_disk_usage.py
Fix new linting errors from flake8 6.1.0
2023-10-19 12:53:59 +01:00
test_remote_files_histories.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_remote_files_posix.py
Relax file source access requirements in tests
2022-12-08 13:33:08 +01:00
test_remote_files.py
Manually compute hash in test of drs fetch
2023-06-14 19:27:31 +05:30
test_repository_operations.py
Merge branch 'release_23.1' into dev
2023-10-06 16:17:22 -04:00
test_resolvers.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_save_job_id_on_datasets.py
Fix SA2.0 syntax (query->select) in integration tests
2023-07-21 13:04:23 -04:00
test_scripts_pgcleanup.py
Augment pgcleanup to allow periodically deleting old datasets.
2023-09-25 15:10:13 -04:00
test_scripts.py
Augment pgcleanup to allow periodically deleting old datasets.
2023-09-25 15:10:13 -04:00
test_shed_tool_tests.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_storage_cleaner.py
Merge branch 'release_23.1' into dev
2023-10-29 09:05:09 +01:00
test_structured_dataset.py
Attempt to fix typing issues in integration tests.
2023-05-24 13:20:21 -04:00
test_tool_data_bundles.py
Push extra files from object store cache to object store
2023-08-26 08:30:16 +02:00
test_tool_data_delete.py
Send reload message after data bundle import is complete
2023-09-03 18:24:28 +02:00
test_upload_configuration_options.py
Test link data with extended metadata
2023-10-25 16:51:36 +02:00
test_user_preferences.py
Refactor get_user_by_username, get_user_by_email; use across code base
2023-09-25 09:23:08 -04:00
test_vault_extra_prefs.py
Refactor get_user_by_username, get_user_by_email; use across code base
2023-09-25 09:23:08 -04:00
test_vault_file_source.py
Refactor get_user_by_username, get_user_by_email; use across code base
2023-09-25 09:23:08 -04:00
test_web_framework_config.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_webdav.py
Restore original filename for file_source_conf_webdav.yml
2023-06-14 19:27:31 +05:30
test_work_queue_put_failure.py
use history_id fixture instead of instance variable with the same name
2022-11-23 01:19:59 +00:00
test_workflow_handler_configuration.py
Fix SA2.0 syntax (query->select) in integration tests
2023-07-21 13:04:23 -04:00
test_workflow_invocation.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_refactoring.py
fix integrations caused by using tag_handler
2023-11-03 22:25:08 -05:00
test_workflow_scheduling_options.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_sync.py
Format Python code with black 23.1.0
2023-02-01 23:51:03 +00:00
test_workflow_tasks.py
Validate BioCompute Objects against schema in tests
2022-10-14 12:20:24 +02:00
user_preferences_extra_conf.yml
Change vault api test case to integration test case and add missing conditional requirements
2021-12-20 18:23:00 +05:30
workflow_handler_configuration_job_conf.xml
…