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46 lines
1.6 KiB
XML
46 lines
1.6 KiB
XML
<tool id="tool_provided_metadata_12" name="tool_provided_metadata_12" profile="17.09" version="1.0.0">
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<!-- Demonstrate setting extra_files for discovered primary datasets in profile >= 17.09 tools. -->
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<command>
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mkdir sample1data;
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echo "1" > sample1.report.tsv;
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echo "foo line" > sample1data/foo;
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echo "moo cow bar" > sample1data/bar;
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cp $c1 galaxy.json;
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</command>
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<configfiles>
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<configfile name="c1">{"sample": {
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"datasets": [
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{"filename": "sample1.report.tsv", "name": "cool name 1", "ext": "txt", "info": "cool 1 info", "dbkey": "hg19", "extra_files": "sample1data"}
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]
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}}
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</configfile>
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</configfiles>
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<inputs>
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<param name="input" type="data" />
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</inputs>
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<outputs>
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<data name="sample">
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<discover_datasets pattern="(?P<designation>.+)\.report\.tsv" visible="true" />
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</data>
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</outputs>
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<tests>
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<test>
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<param name="input" ftype="txt" value="simple_line.txt"/>
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<output name="sample">
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<discovered_dataset designation="sample1" ftype="txt">
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<assert_contents><has_line line="1" /></assert_contents>
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<metadata name="name" value="cool name 1" />
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<metadata name="dbkey" value="hg19" />
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<metadata name="info" value="cool 1 info" />
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<extra_files type="file" name="foo">
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<assert_contents><has_line line="foo line" /></assert_contents>
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</extra_files>
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<extra_files type="file" name="bar">
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<assert_contents><has_line line="moo cow bar" /></assert_contents>
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</extra_files>
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</discovered_dataset>
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</output>
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</test>
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</tests>
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</tool>
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