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https://github.com/galaxyproject/galaxy.git
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John Chilton
517f248ac4
- Add another test to demonstrate referencing entries in galaxy.json for datasets by dataset path basename instead of ID. - Add a bit more documentation to test tools. - Redo the structure of galaxy.json for profile >= 17.09 tools with two new test tools to demonstrate the new structure - for both output dataset metadata and discovered dataset metadata. - Improved abstractions for interaction between tools and jobs to enable different tool provided metadata collection depending on tool profile version.
31 lines
1.2 KiB
XML
31 lines
1.2 KiB
XML
<tool id="tool_provided_metadata_1" name="tool_provided_metadata_1">
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<!-- Demonstrate setting simple dataset metadata for output datasets via galaxy.json for legacy tools (galaxy.json structure changes for profile >= 17.09 tools). -->
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<command>
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echo "This is a line of text." > $out1;
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cp $c1 galaxy.json;
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</command>
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<configfiles>
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<configfile name="c1">{"type": "dataset", "dataset_id": $out1.dataset.dataset.id, "name": "my dynamic name", "ext": "txt", "info": "my dynamic info", "dbkey": "cust1"}</configfile>
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</configfiles>
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<inputs>
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<param name="input1" type="data" label="Input Dataset"/>
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</inputs>
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<outputs>
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<!-- Set format="auto" to read from galaxy.json, use auto_format="true"
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to sniff. -->
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<data name="out1" format="auto" />
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</outputs>
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<help>
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</help>
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<tests>
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<test>
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<param name="input1" value="simple_line.txt" />
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<output name="out1" file="simple_line.txt" ftype="txt">
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<metadata name="name" value="my dynamic name" />
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<metadata name="info" value="my dynamic info" />
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<metadata name="dbkey" value="cust1" />
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</output>
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</test>
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</tests>
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</tool>
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