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https://github.com/galaxyproject/galaxy.git
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John Chilton
f91012244b
The galaxy-tool-shed-schema package is basically pydantic models for the whole tool shed API. It is used by both the backend code for the new tool shed and the testing code that runs on both the old and new tool shed. The creation of galaxy-tool-util-models package is something I've wanted to do for a while - it should solve some TODOs I've left in the base. I think beyond enabling galaxy-tool-shed-schema package - the other nice thing is that galaxy-schema code can now rely on various tool stuff without requiring dependency on any of the parser or runtime code. This should also fix things for the new record types in #19377. I've introduced a type that can be used tools and is included schema for collection creation. The galaxy-tool-util-models packages can now be dependended on by galaxy-schema and galaxy-tool-util and these two packages do not need to depend on each other - either direction of that dependency would make me uncomfortable. xref https://github.com/galaxyproject/galaxy/actions/runs/13704893929/job/38327692654?pr=19377
40 lines
1.2 KiB
Python
40 lines
1.2 KiB
Python
import os
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from pathlib import Path
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from typing import List
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import yaml
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from galaxy.tool_util_models import Tests
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from galaxy.util import galaxy_directory
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from galaxy.util.unittest_utils import skip_unless_environ
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TEST_WORKFLOW_DIRECTORY = os.path.join(galaxy_directory(), "lib", "galaxy_test", "workflow")
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IWC_WORKFLOWS_USING_UNVERIFIED_SYNTAX: List[str] = []
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def test_validate_workflow_tests():
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path = Path(TEST_WORKFLOW_DIRECTORY)
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test_files = path.glob("*.gxwf-tests.yml")
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for test_file in test_files:
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with open(test_file) as f:
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json = yaml.safe_load(f)
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Tests.model_validate(json)
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@skip_unless_environ("GALAXY_TEST_IWC_DIRECTORY")
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def test_iwc_directory():
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path = Path(os.environ["GALAXY_TEST_IWC_DIRECTORY"])
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test_files = path.glob("workflows/**/*-test*.yml")
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for test_file in test_files:
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print(test_file)
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skip_file = False
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for unverified in IWC_WORKFLOWS_USING_UNVERIFIED_SYNTAX:
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if str(test_file).endswith(unverified):
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skip_file = True
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if skip_file:
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continue
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with open(test_file) as f:
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json = yaml.safe_load(f)
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Tests.model_validate(json)
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