mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-24 12:13:33 +08:00
John Chilton
ac197e7f25
- Downstream I want a way to load plugins from outside the ConfiguredFileSources class. - Adds some more typing as I went in there and refactored things.
41 lines
1.1 KiB
Python
41 lines
1.1 KiB
Python
import os
|
|
|
|
from galaxy.datatypes import sniff
|
|
from galaxy.files.plugins import FileSourcePluginsConfig
|
|
from galaxy.files.unittest_utils import (
|
|
setup_root,
|
|
TestConfiguredFileSources,
|
|
write_file_fixtures,
|
|
)
|
|
|
|
|
|
def test_posix():
|
|
file_sources = _configured_file_sources()
|
|
as_dict = file_sources.to_dict()
|
|
assert len(as_dict["file_sources"]) == 1
|
|
file_source_as_dict = as_dict["file_sources"][0]
|
|
assert file_source_as_dict["uri_root"] == "gxfiles://test1"
|
|
|
|
_download_and_check_file(file_sources)
|
|
|
|
|
|
def _download_and_check_file(file_sources):
|
|
tmp_name = sniff.stream_url_to_file("gxfiles://test1/a", file_sources=file_sources)
|
|
try:
|
|
a_contents = open(tmp_name).read()
|
|
assert a_contents == "a\n"
|
|
finally:
|
|
os.remove(tmp_name)
|
|
|
|
|
|
def _configured_file_sources() -> TestConfiguredFileSources:
|
|
tmp, root = setup_root()
|
|
file_sources_config = FileSourcePluginsConfig()
|
|
plugin = {
|
|
"type": "posix",
|
|
}
|
|
plugin["root"] = root
|
|
write_file_fixtures(tmp, root)
|
|
file_sources = TestConfiguredFileSources(file_sources_config, conf_dict={"test1": plugin}, test_root=root)
|
|
return file_sources
|