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mvdbeek
45 lines
1.5 KiB
Python
Executable File
45 lines
1.5 KiB
Python
Executable File
"""
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Creates the initial galaxy database schema using the settings defined in
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config/galaxy.ini.
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This script is also wrapped by create_db.sh.
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.. note: pass '-c /location/to/your_config.ini' for non-standard ini file
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locations.
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.. note: if no database_connection is set in galaxy.ini, the default, sqlite
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database will be constructed.
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Using the database_file setting in galaxy.ini will create the file at the
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settings location (??)
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.. seealso: galaxy.ini, specifically the settings: database_connection and
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database file
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"""
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import logging
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import os.path
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import sys
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sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))
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from galaxy.model.migrate.check import create_or_verify_database as create_db
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from galaxy.model.orm.scripts import get_config
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from galaxy.model.tool_shed_install.migrate.check import create_or_verify_database as create_install_db
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from tool_shed.webapp.model.migrate.check import create_or_verify_database as create_tool_shed_db
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logging.basicConfig(level=logging.DEBUG)
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log = logging.getLogger(__name__)
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def invoke_create():
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config = get_config(sys.argv)
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if config['database'] == 'galaxy':
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create_db(config['db_url'], config['config_file'], map_install_models=not config['install_database_connection'])
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elif config['database'] == 'tool_shed':
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create_tool_shed_db(config['db_url'])
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elif config['database'] == 'install':
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create_install_db(config['db_url'])
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if __name__ == "__main__":
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invoke_create()
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