Kelly Vincent a314b3716b Updated BWA wrapper, SAM to BAM, SAM Merge, and SAM Pileup so that the return code of the program is captured and if it fails, the stderr is printed; temp files are created locally; a message is printed if results file empty.

2010-02-23 10:40:19 -05:00

..

bowtie_color_wrapper.xml

Fixing typos in bowtie wrappers

2010-01-26 19:42:00 -05:00

bowtie_wrapper_code.py

Changed the bowtie wrapper tool into two different tools: one for illumina data and one for solid

2010-01-12 16:49:02 -05:00

bowtie_wrapper.py

Removed SOLiD option from BWA, cleaned up Bowtie and BWA wrapper interfaces, and changed name of BWA index loc file

2010-01-22 10:49:38 -05:00

bowtie_wrapper.xml

Revert bowtie wrapper -- accidently committed change from testing

2010-01-29 11:40:23 -05:00

bwa_wrapper_code.py

Corrected problem with assignment of dbkey to output from BWA and Bowtie tools

2009-10-02 10:49:09 -04:00

bwa_wrapper.py

Updated BWA wrapper, SAM to BAM, SAM Merge, and SAM Pileup so that the return code of the program is captured and if it fails, the stderr is printed; temp files are created locally; a message is printed if results file empty.

2010-02-23 10:40:19 -05:00

bwa_wrapper.xml

Updated BWA wrapper, SAM to BAM, SAM Merge, and SAM Pileup so that the return code of the program is captured and if it fails, the stderr is printed; temp files are created locally; a message is printed if results file empty.

2010-02-23 10:40:19 -05:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

lastz_wrapper.py

Enhance lastz tool, enhance functional test framework, and fix a bug in editing permissions on a folder:

2010-01-11 13:26:00 -05:00

lastz_wrapper.xml

Small changes to the list of pre-set options in lastz

2010-01-26 19:52:38 -05:00