John Chilton 2270f728c4 Consistent sniffing regardless of in_place. ...

Previously sniffing would happen on the original file (before carriage returns and tabular spaces were converted) if in_place was false and on the converted file if it was true.

2018-03-06 13:26:47 -05:00

..

access_libraries.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

bed_convert.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

biomart_test.xml

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

biomart.xml

no parens

2016-04-14 16:59:25 -04:00

cbi_rice_mart.xml

Add the CBI Rice Mart data source tool to the distribution.

2010-06-04 15:49:58 -04:00

data_source.py

Remove is_multi_byte from upload.py

2017-11-30 18:06:37 +00:00

ebi_sra.xml

Always access EBI SRA via HTTPS.

2014-09-22 11:23:02 -04:00

eupathdb.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

fetch.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

fly_modencode.xml

Update default dbkey for fly_modencode.xml and bump version.

2015-05-20 12:39:59 -04:00

flymine_test.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

flymine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

genbank.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

genbank.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

gramene_mart.xml

Enhance tool parameter sanitization. Sanitization rules can now be defined on a per input parameter basis. Resolves ticket #38 and #142.

2009-12-07 10:19:41 -05:00

hapmapmart.xml

adding hapmapmart.xml to tools/data_source

2010-11-18 10:30:27 -05:00

hbvar_filter.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

hbvar.xml

Rewrite HbVar datasource tool.

2012-05-04 15:35:51 -04:00

import.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

import.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

metabolicmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

microbial_import_code.py

Remove unused import

2018-01-17 16:26:56 +00:00

microbial_import.py

Fix all E722 errors and ignore E741

2017-10-24 11:29:09 +01:00

microbial_import.xml

fix few stray wiki links

2017-11-15 16:39:26 -05:00

modmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

mousemine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ratmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_tablebrowser_archaea.xml

Add citations to ucsc browser tools.

2015-10-05 15:55:21 +01:00

ucsc_tablebrowser_test.xml

Add citations to ucsc browser tools.

2015-10-05 15:55:21 +01:00

ucsc_tablebrowser.xml

Add citations to ucsc browser tools.

2015-10-05 15:55:21 +01:00

upload.py

Consistent sniffing regardless of in_place.

2018-03-06 13:26:47 -05:00

upload.xml

Drop samtools from metadata and upload tools

2017-12-08 11:35:31 +01:00

worm_modencode.xml

Update default dbkey for worm_modencode.xml and bump version.

2015-05-20 12:42:05 -04:00

wormbase_test.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

wormbase.xml

Update WormBase datasource tool to use WormBase 2.

2012-05-02 17:04:33 -04:00

yeastmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

zebrafishmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00