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https://github.com/galaxyproject/galaxy.git
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Wolfgang Maier
76968a68c7
Since the code now drops undeclared incoming parameters it enforces cleaner wrapper style.
53 lines
3.0 KiB
XML
53 lines
3.0 KiB
XML
<?xml version="1.0"?>
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<!--
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If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
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the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
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initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
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-->
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<tool name="UCSC Test" id="ucsc_table_direct_test1" tool_type="data_source" version="1.0.1" profile="20.09">
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<description>table browser</description>
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<edam_operations>
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<edam_operation>operation_0224</edam_operation>
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</edam_operations>
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<command><![CDATA[
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python '$__tool_directory__/data_source.py' '$output' $__app__.config.output_size_limit
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]]></command>
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<inputs action="http://genome-test.gi.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
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<display>go to UCSC Table Browser $GALAXY_URL</display>
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<param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
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<param name="tool_id" type="hidden" value="ucsc_table_direct_test1" />
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<param name="sendToGalaxy" type="hidden" value="1" />
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<param name="hgta_compressType" type="hidden" value="none" />
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<param name="hgta_outputType" type="hidden" value="bed" />
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</inputs>
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<request_param_translation>
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<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
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<request_param galaxy_name="URL" remote_name="URL" missing="" />
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<request_param galaxy_name="dbkey" remote_name="db" missing="?" />
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<request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
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<request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
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<request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
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<request_param galaxy_name="position" remote_name="position" missing="unknown position" />
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<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="auto" >
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<value_translation>
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<value galaxy_value="auto" remote_value="primaryTable" />
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<value galaxy_value="auto" remote_value="selectedFields" />
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<value galaxy_value="wig" remote_value="wigData" />
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<value galaxy_value="interval" remote_value="tab" />
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<value galaxy_value="html" remote_value="hyperlinks" />
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<value galaxy_value="fasta" remote_value="sequence" />
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<value galaxy_value="gtf" remote_value="gff" />
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</value_translation>
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</request_param>
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</request_param_translation>
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<uihints minwidth="800"/>
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<outputs>
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<data name="output" format="tabular" label="${tool.name} on ${organism}: ${table} (#if $description == 'range' then $position else $description#)"/>
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</outputs>
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<options sanitize="False" refresh="True"/>
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<citations>
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<citation type="doi">10.1093/database/bar011</citation>
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<citation type="doi">10.1101/gr.229102</citation>
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</citations>
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</tool>
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