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Wolfgang Maier
bd0f257452
Allows moving all data source tools using the script to profile 20.09. For more recent profiles data_source.py would have to work outside of Galaxy's Python environment.
41 lines
2.1 KiB
XML
41 lines
2.1 KiB
XML
<?xml version="1.0"?>
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<!--
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If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
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the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
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initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
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-->
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<tool name="MouseMine" id="mousemine" tool_type="data_source" version="1.0.0" profile="20.09">
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<description>server</description>
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<edam_operations>
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<edam_operation>operation_0224</edam_operation>
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</edam_operations>
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<command><![CDATA[
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python '$__tool_directory__/data_source.py' '$output' $__app__.config.output_size_limit
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]]></command>
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<inputs action="http://www.mousemine.org/mousemine/begin.do" check_values="false" method="get">
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<display>go to MouseMine server $GALAXY_URL</display>
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<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=mousemine" />
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</inputs>
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<request_param_translation>
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<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
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<request_param galaxy_name="URL" remote_name="URL" missing="" />
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<request_param galaxy_name="dbkey" remote_name="db" missing="?" />
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<request_param galaxy_name="organism" remote_name="organism" missing="" />
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<request_param galaxy_name="table" remote_name="table" missing="" />
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<request_param galaxy_name="description" remote_name="description" missing="" />
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<request_param galaxy_name="name" remote_name="name" missing="MouseMine query" />
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<request_param galaxy_name="info" remote_name="info" missing="" />
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<request_param galaxy_name="data_type" remote_name="data_type" missing="auto" >
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<value_translation>
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<value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect -->
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</value_translation>
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</request_param>
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</request_param_translation>
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<uihints minwidth="800"/>
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<outputs>
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<data name="output" format="txt" />
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</outputs>
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<options sanitize="False" refresh="True"/>
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</tool>
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