Kelly Vincent a4f910c730 Update SRMA test files so that functional tests pass

2011-03-08 16:17:09 -05:00

..

bfast_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

bfast_wrapper.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

bowtie_color_wrapper.xml

Enhance Bowtie wrapper to accept non-sanger variant FASTQ files.

2011-03-02 11:40:58 -05:00

bowtie_wrapper.py

Enhance Bowtie wrapper to accept non-sanger variant FASTQ files.

2011-03-02 11:40:58 -05:00

bowtie_wrapper.xml

Enhance Bowtie wrapper to accept non-sanger variant FASTQ files.

2011-03-02 11:40:58 -05:00

bwa_color_wrapper.xml

Update bwa_color_wrapper cached indices name to match the key used in the test data repository

2011-03-01 15:21:25 -05:00

bwa_wrapper.py

Added BWA color space wrapper; fixed names of FASTQ test files to indicate data type

2011-01-12 12:13:54 -05:00

bwa_wrapper.xml

Update bwa_wrapper to use the test data repository. bwa_color_wrapper will need to be done once the test data repository is updated to contain the data it uses.

2011-02-23 13:54:06 -05:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

lastz_paired_reads_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_paired_reads_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

lastz_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_wrapper.xml

Typos

2011-02-25 13:35:27 -05:00

mosaik.xml

Remove ftype from mosaik/freebayes test outputs.

2011-03-02 08:38:19 -05:00

PerM.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

srma_wrapper.py

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

srma_wrapper.xml

Update SRMA test files so that functional tests pass

2011-03-08 16:17:09 -05:00