Wen-Yu Chung 9f0f822deb add a section: metagenomics ...

tools for running phred(need to change path later), trim sequence, generate boxplot and an array of length of the reads.
test data are added.
trim sequence and array of length passed functional test.
phred (2 ouput files) and boxplot (pdf file) didn't pass functional test yet.

2008-01-09 20:41:59 +00:00

..

1.axt

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

1.bed

change test data to smaller ones

2007-06-01 20:15:01 +00:00

1.customtrack

Some test data I missed.

2007-10-05 19:10:24 +00:00

1.fasta

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

1.interval

Some test data I missed.

2007-10-05 19:10:24 +00:00

1.lav

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

1.scf

Deleted a huge emboss test data file that is not needed. Added binary, zipped and gzipped test data files.

2007-12-20 17:43:05 +00:00

1.tabular

Fixes for the grouping tool.

2007-08-17 14:23:42 +00:00

1.txt

Added new Subtract Whole Query tool. Also some miscellaneous code clean-up.

2007-05-07 18:59:15 +00:00

1.wig

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

2.bed

change test data to smaller ones

2007-06-01 20:15:01 +00:00

2.fasta

Version 5.0 of EMBOSS Antigenic tool.

2007-12-11 15:59:01 +00:00

3.bed

change test data to smaller ones

2007-06-02 03:06:00 +00:00

3.maf

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

4.bed

First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons:

2007-11-16 20:08:31 +00:00

4.bed.gz

Deleted a huge emboss test data file that is not needed. Added binary, zipped and gzipped test data files.

2007-12-20 17:43:05 +00:00

5.bed

Reverting the test data for the gops_cluster tool to that which was originally used by Ian in rev 1636.

2008-01-07 13:02:10 +00:00

5.gff

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

5.gff3

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

6.bed

update data for nj_tree_newrick aggregate test

2007-04-18 19:54:12 +00:00

7.bed

change test data to smaller ones

2007-06-02 03:06:00 +00:00

8.bed

2007-10-26 19:28:36 +00:00

8.tabular

More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files.

2007-10-04 14:14:15 +00:00

454Score.pdf

add a section: metagenomics

2008-01-09 20:41:59 +00:00

aggregate_binned_scores_in_intervals.bed

cleaned up tests and old script for aggregate(binned) scores

2007-03-13 21:20:31 +00:00

emboss_noreturn_out.noreturn

Adding EMBOSS v5.0 newcpgreport noreturn patmatdb pepinfo pepnet pepwheel pepwindow pepwindowall plotcon pepcoil pepstats plotorf polydot noreturn octanol oddcomp

2007-12-17 14:26:48 +00:00

eq-cat.dat

change test data to smaller ones

2007-06-01 20:15:01 +00:00

eq-condense.dat

change test data to smaller ones

2007-06-01 20:15:01 +00:00

eq-convert.dat

change test data to smaller ones

2007-06-01 20:15:01 +00:00

filter1_test1.bed

More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files.

2007-10-04 14:14:15 +00:00

filter1_test2.bed

More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files.

2007-10-04 14:14:15 +00:00

fs-grep.dat

change test data to smaller ones

2007-06-01 20:15:01 +00:00

gops-concat.dat

change test data to smaller ones

2007-06-01 20:15:01 +00:00

html_file.txt

Some test data I missed.

2007-10-05 19:10:24 +00:00

maf_limit_size1_out.maf

Added functional tests for sniffing and metadata settings on file upload. Fixed a test in the 'Filter Maf Blocks by size' tool. Added new test data. Commited the bug fix I really wanted in Axt.sniff().

2007-10-05 18:02:33 +00:00

sort1_alpha.bed

More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files.

2007-10-04 14:14:15 +00:00

sort1_num.bed

More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files.

2007-10-04 14:14:15 +00:00