John Chilton 26327235cb Merge pull request #9345 from mvdbeek/converter_requirements ...

[20.01] Add requirements to (almost) all converters, profile and minor fixes

2020-02-14 14:24:29 -05:00

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cloud

Commented-out cloudbridge requirement for the cloud/send tool.

2019-04-12 08:46:46 -04:00

data_source

Improve logging around provided metadata indicated errors.

2019-10-24 13:34:07 -04:00

evolution

Add version attribute to tool requirements

2018-04-25 15:50:35 +01:00

expression_tools

Fix parse_values_from_file tool and tests

2019-05-14 00:14:34 +02:00

extract

Merge pull request #6684 from nsoranzo/deprecate_param_size

2018-12-12 10:51:28 -05:00

filters

Use context manager in CONVERTER_gff_to_bed_0

2020-02-09 16:44:20 +01:00

interactive

upgrade tool to 3.2.1

2020-01-07 16:57:17 -05:00

maf

Fix errors reported by new flake8 3.7.3

2019-01-31 13:47:21 +00:00

meme

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

metag_tools

Deprecate size attribute of <param/> and remove it from tools

2018-09-10 11:34:37 +01:00

next_gen_conversion

Fix script shebangs

2019-10-26 20:20:01 +01:00

ngs_simulation

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

phenotype_association

Fix script shebangs

2019-10-26 20:20:01 +01:00

plotting

Update tools/plotting/bar_chart.py

2020-02-06 16:28:52 +01:00

solid_tools

Deprecate size attribute of <param/> and remove it from tools

2018-09-10 11:34:37 +01:00

sr_assembly

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

sr_mapping

Deprecate size attribute of <param/> and remove it from tools

2018-09-10 11:34:37 +01:00

stats

Python3: unicodify the output of `subprocess.check_output()`

2020-02-05 12:13:39 +00:00

visualization

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00