Greg Von Kuster 6d80665988 Added file_size column to dataset table, requires db schema alteration: ...

alter table dataset add column file_size numeric(15,0)
Also added new script update_dataset_size.py

2008-01-08 16:19:25 +00:00

..

bed_convert.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

biomart_filter.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

biomart_test.xml

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

biomart.xml

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

echo.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

echo.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

encode_db.xml

More width hints for data source tools.

2007-07-05 19:20:33 +00:00

encode_import_all_latest_datasets.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

encode_import_chromatin_and_chromosomes.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

encode_import_code.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

encode_import_gencode.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

encode_import_genes_and_transcripts.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

encode_import_multi-species_sequence_analysis.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

encode_import_transcription_regulation.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

encode_import.py

Better error handling in interval_to_bd_converter, a couple of other small tool fixes.

2008-01-07 18:49:12 +00:00

encodedb_filter.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

fetch.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

genbank.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

genbank.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

hbvar_filter.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

hbvar.xml

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

import.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

import.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

microbial_import_code.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

microbial_import.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

microbial_import.xml

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

ucsc_archaea.xml

There has to be at least one tool named 'ucsc_proxy' for the proxies to work. They all use the same code with different urls, but they have to submit back to the tool_runner at the end. This closes ticket 121.

2007-05-30 15:47:59 +00:00

ucsc_filter.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

ucsc_proxy.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

ucsc_proxy.xml

Update UCSC direct connection to use main ucsc site. Add direct test

2007-03-21 19:52:01 +00:00

ucsc_tablebrowser_archaea.xml

More width hints for data source tools.

2007-07-05 19:20:33 +00:00

ucsc_tablebrowser_code.py

Added file_size column to dataset table, requires db schema alteration:

2008-01-08 16:19:25 +00:00

ucsc_tablebrowser_test.xml

More width hints for data source tools.

2007-07-05 19:20:33 +00:00

ucsc_tablebrowser.py

A better way to decompress UCSC gzipped files. Added functional tests for uploading binary, zipped and gzipped files. Added temp file removal to upload when exception thrown. Eliminated an unnecessary import in subtract_query.

2007-12-20 18:49:03 +00:00

ucsc_tablebrowser.xml

New layouts and style.

2007-07-05 18:39:36 +00:00

ucsc_testproxy.xml

Update UCSC direct connection to use main ucsc site. Add direct test

2007-03-21 19:52:01 +00:00

upload.xml

Enhanced upload to handle certain binary and zip files. Cleaned up the upload config. Added 4 new data types: ab1, scf, binseq.zip and txtseq.zip. Added Regional Variation section to tool_conf.xml.main.

2007-12-14 21:07:11 +00:00