John ChiltonandClaude Opus 4.6 4f30b3efd5 Add any-collection-type YAML tool with comprehensive job_runtime specs. ...

New gx_data_collection_any_y tool accepts any collection type (no
collection_type constraint). Specs cover list, paired, list:paired,
and record in job_runtime_valid. Fix parameter_tool_source to handle
_y suffix convention matching functional_test_tool_source.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

2026-02-12 15:58:17 -05:00

..

cwl_boolean_optional.cwl

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cwl_boolean.cwl

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cwl_directory.cwl

…

cwl_file.cwl

…

cwl_float_optional.cwl

…

cwl_float.cwl

…

cwl_int_optional.cwl

…

cwl_int.cwl

…

cwl_string_optional.cwl

…

cwl_string.cwl

…

gx_allow_uri_if_protocol.xml

Add test for gx_allow_uri_if_protocol with deferred collections

2024-11-03 12:47:15 +01:00

gx_boolean_checked.xml

Tool Request models.

2024-09-30 13:25:02 -04:00

gx_boolean_optional_checked.xml

Tool Request models.

2024-09-30 13:25:02 -04:00

gx_boolean_optional.xml

Tool Request models.

2024-09-30 13:25:02 -04:00

gx_boolean_user.yml

Failing gx_boolean_user.yml tool to develop against.

2026-02-12 15:58:16 -05:00

gx_boolean.xml

Tool Request models.

2024-09-30 13:25:02 -04:00

gx_color_optional.xml

Fix parameter models for optional color params.

2025-07-30 11:37:12 -04:00

gx_color.xml

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gx_conditional_boolean_checked.xml

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gx_conditional_boolean_discriminate_on_string_value.xml

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gx_conditional_boolean_optional.xml

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gx_conditional_boolean.xml

…

gx_conditional_conditional_boolean.xml

…

gx_conditional_select_dynamic.xml

Tool Request API...

2025-10-29 16:33:22 -04:00

gx_conditional_select.xml

Parameter specification reference testing - conditionals with selects.

2024-08-05 09:44:43 -04:00

gx_data_collection_any.yml

Add any-collection-type YAML tool with comprehensive job_runtime specs.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_list_paired.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_list.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_or_list_paired.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_or_paired.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_or_record.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_paired_or_list_list.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list_paired.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_list.xml

Implement collection references in tool request API.

2025-10-29 16:34:17 -04:00

gx_data_collection_optional.xml

…

gx_data_collection_paired_or_pou.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_paired_or_unpaired.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_paired.xml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_record.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection_sample_sheet.yml

Normalize YAML tool naming scheme in test tools.

2026-02-12 15:58:17 -05:00

gx_data_collection.xml

Implement collection references in tool request API.

2025-10-29 16:34:17 -04:00

gx_data_column_accept_default.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_multiple_accept_default.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_multiple_optional_with_default.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_multiple_optional.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_multiple_with_default.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_multiple.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_optional_accept_default.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_optional.xml

Parameter models for optional data columns.

2024-08-11 17:19:21 -04:00

gx_data_column_with_default_legacy.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column_with_default.xml

More tests for various data column feature combos.

2024-09-30 13:25:02 -04:00

gx_data_column.xml

Work toward data column support in tool parameter meta models.

2024-08-05 18:37:24 -04:00

gx_data_multiple_optional.xml

…

gx_data_multiple_user.yml

Modeling and validation of YAML tool test cases.

2026-02-12 10:50:13 -05:00

gx_data_multiple.xml

…

gx_data_optional.xml

…

gx_data_user.yml

Modeling and validation of YAML tool test cases.

2026-02-12 10:50:13 -05:00

gx_data.xml

…

gx_directory_uri_validation.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_directory_uri.xml

Parameter models for directory_uri parameters.

2024-08-09 11:54:19 -04:00

gx_drill_down_code.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

gx_drill_down_code.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_drill_down_exact_multiple.xml

Richer typing / models / parsing for drill down parameters.

2024-08-05 17:02:51 -04:00

gx_drill_down_exact_with_selection.xml

Richer typing / models / parsing for drill down parameters.

2024-08-05 17:02:51 -04:00

gx_drill_down_exact.xml

Richer typing / models / parsing for drill down parameters.

2024-08-05 17:02:51 -04:00

gx_drill_down_recurse_multiple.xml

Richer typing / models / parsing for drill down parameters.

2024-08-05 17:02:51 -04:00

gx_drill_down_recurse.xml

Richer typing / models / parsing for drill down parameters.

2024-08-05 17:02:51 -04:00

gx_float_min_max.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_float_optional.xml

…

gx_float_validation_range.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_float.xml

…

gx_genomebuild_multiple.xml

Parameter models for genomebuild parameters

2024-08-09 11:54:19 -04:00

gx_genomebuild_optional.xml

Parameter models for genomebuild parameters

2024-08-09 11:54:19 -04:00

gx_genomebuild.xml

Parameter models for genomebuild parameters

2024-08-09 11:54:19 -04:00

gx_group_tag_multiple.xml

Parmaeter models for multiple=true group tags.

2024-08-11 17:19:21 -04:00

gx_group_tag_optional.xml

Tool parameter models for optional group tags.

2024-08-10 10:30:20 -04:00

gx_group_tag.xml

Implement group tag testing in tools.

2024-08-09 11:54:19 -04:00

gx_hidden_optional.xml

…

gx_hidden_validation.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_hidden.xml

…

gx_int_min_max.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_int_optional.xml

Fix various parameter validation issues.

2025-04-02 12:49:09 -04:00

gx_int_required_via_empty_string.xml

Update parameter models for required integers.

2024-08-09 11:54:19 -04:00

gx_int_required.xml

Update parameter models for required integers.

2024-08-09 11:54:19 -04:00

gx_int_validation_range.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_int.xml

…

gx_repeat_boolean_min.xml

Progress on repeat validation...

2024-08-05 09:44:43 -04:00

gx_repeat_boolean.xml

…

gx_repeat_data_min.xml

…

gx_repeat_data.xml

…

gx_repeat_select_dynamic.xml

Tool Request API...

2025-10-29 16:33:22 -04:00

gx_section_boolean.xml

…

gx_section_data.xml

…

gx_section_select_dynamic.xml

Tool Request API...

2025-10-29 16:33:22 -04:00

gx_select_dynamic_empty_validated.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_select_dynamic_empty.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

gx_select_dynamic_empty.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_select_dynamic_options.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

gx_select_dynamic.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_select_multiple_one_default_user.yml

Add a function tests for multiple selects from user tools.

2026-02-12 15:58:16 -05:00

gx_select_multiple_one_default.xml

Fix tool request API for multiple select parameters with defaults.

2025-12-10 09:44:08 -05:00

gx_select_multiple_optional.xml

More clarification of empty/multiple/optional select behaviors.

2024-08-11 17:19:21 -04:00

gx_select_multiple.xml

More clarification of empty/multiple/optional select behaviors.

2024-08-11 17:19:21 -04:00

gx_select_no_options_validation.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_select_optional_no_options_validation.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_select_optional.xml

Tool Request models.

2024-09-30 13:25:02 -04:00

gx_select.xml

Address PR comment in gx_select.xml, improve comment.

2024-08-09 11:54:19 -04:00

gx_text_default.xml

Implement text defaults in Tool Request API.

2025-10-29 16:33:27 -04:00

gx_text_empty_validation.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_text_expression_validation.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_text_length_validation_negate.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_text_length_validation.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_text_optional_false.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_text_optional.xml

More tool tests.

2024-10-22 07:49:37 -04:00

gx_text_regex_validation.xml

Pydantic models for parameter validators.

2024-10-22 07:49:37 -04:00

gx_text.xml

More tool tests.

2024-10-22 07:49:37 -04:00

macros.xml

Richer typing / models / parsing for drill down parameters.

2024-08-05 17:02:51 -04:00