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galaxy/test/integration
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Nicola Soranzo 196e000191 Fix upload of gzipped VCF files 
which were mistakenly sniffed as `vcf_bgzip`.

Fix Fix https://github.com/galaxyproject/galaxy/issues/4892 .
2019-05-10 19:47:48 +01:00
..
chained_dyndest_rules
Added integration test for rules_module overrides
2018-11-16 12:27:32 +05:30
delay_rules
Integration test for job recovery (before and after handler has picked it up).
2018-08-21 15:17:12 -04:00
objectstore_selection_rules
Allow configuring object stores on a per-job-destination basis.
2018-08-06 11:29:08 -04:00
resubmission_rules
Test resubmit for completely dynamic JobDestination structures.
2017-12-06 10:25:29 -05:00
__init__.py
…
chained_dyndest_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
delay_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
dockerized_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_metadata_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
handler_template_job_conf.xml
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
io_injection_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
objectstore_selection_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
objectstore_selection_job_resource_parameters_conf.xml
Allow configuring object stores on a per-job-destination basis.
2018-08-06 11:29:08 -04:00
resubmission_default_job_conf.xml
Implement a Galaxy config option for default job re-submission conditions.
2017-01-04 16:11:56 -05:00
resubmission_dynamic_job_conf.xml
Test resubmit for completely dynamic JobDestination structures.
2017-12-06 10:25:29 -05:00
resubmission_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
resubmission_job_resource_parameters_conf.xml
Add seconds_running and seconds_since_queued to condition expression langauge.
2016-12-14 13:41:29 -05:00
resubmission_pulsar_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
resubmission_runners.py
Implement a Galaxy config option for default job re-submission conditions.
2017-01-04 16:11:56 -05:00
resubmission_small_memory_job_conf.xml
Tool-centric annotation of out of memory errors.
2017-12-22 09:08:18 -05:00
resubmission_small_memory_resubmission_to_large_job_conf.xml
Tool-centric annotation of out of memory errors.
2017-12-22 09:08:18 -05:00
resubmission_tool_detected_always_error_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
resubmission_tool_detected_resubmit_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
sets_tmp_dir_expression_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
sets_tmp_dir_to_true_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
simple_job_conf.xml
Fix failing integration test.
2019-05-03 08:38:33 -04:00
singularity_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
test_chained_dynamic_destinations.py
Update test/integration/test_chained_dynamic_destinations.py
2018-11-16 17:12:45 +05:30
test_cli_runners.py
Share ssh key generation across tests
2018-10-14 18:08:17 +02:00
test_config_options_users.py
Tweak exposing user attributes to use an include list instead of exclude list.
2017-07-05 07:04:20 -04:00
test_containerized_jobs.py
Don't use skip_unless_docker decorator
2019-03-02 12:19:14 +01:00
test_data_manager_table_reload.py
py3: fix installing and running data managers
2018-08-14 14:56:06 +02:00
test_datatype_upload.py
Fix upload of gzipped VCF files
2019-05-10 19:47:48 +01:00
test_handler_assignment_methods.py
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
test_job_environments.py
Seperate tool and job script standard I/O.
2019-03-04 15:39:07 -05:00
test_job_recovery.py
Test cancelling jobs, running mulled containers on kubernetes
2019-02-19 13:22:10 +01:00
test_job_resubmission.py
Added test for pulsar resubmission
2018-11-28 22:41:38 +05:30
test_kubernetes_runner.py
Fix kubernetes integration tests for Docker on Mac.
2019-04-16 08:28:36 -04:00
test_local_job_cancellation.py
Update to flake8-import-order 0.16
2017-12-01 11:09:57 +00:00
test_mules_as_job_handlers.py
Do test mules on Jenkins, I don't see why this shouldn't work
2018-08-14 14:56:07 +02:00
test_objectstore_jobs.py
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
test_objectstore_selection.py
Allow configuring object stores on a per-job-destination basis.
2018-08-06 11:29:08 -04:00
test_pulsar_embedded_metadata.py
Fix pulsar with metadata_strategy == 'directory'.
2019-04-08 16:30:15 -04:00
test_pulsar_embedded.py
Refactor IntegrationTestCase to allow integration test functions.
2019-04-04 14:58:55 -04:00
test_resolvers.py
Add integration test for un/install with resolver_type
2019-01-06 15:01:31 +01:00
test_scripts.py
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
test_shed_tool_tests.py
Integration test case for running tool tests against shed installed tools.
2018-03-06 20:07:52 -05:00
test_upload_configuration_options.py
Refactor IntegrationTestCase to allow integration test functions.
2019-04-04 14:58:55 -04:00
test_workflow_handler_configuration.py
Update to flake8-import-order 0.16
2017-12-01 11:09:57 +00:00
test_workflow_scheduling_options.py
Update to flake8-import-order 0.16
2017-12-01 11:09:57 +00:00
test_workflow_sync.py
Use `yaml.safe_load() instead of load()`
2019-04-23 16:50:55 +01:00
tool_sheds_conf.xml
py3: fix installing and running data managers
2018-08-14 14:56:06 +02:00
uses_shed.py
Allow setting CONDA_PREFIX using GALAXY_TEST_CONDA_PREFIX in testing
2018-08-23 14:57:31 +02:00
workflow_handler_configuration_job_conf.xml
[17.01] Restrict workflow scheduling within a history to a fixed, random handler.
2017-03-29 22:20:41 -04:00
workflow_handler_configuration_workflow_scheduler_conf.xml
Allow explicit workflow scheduler handler process configuration.
2017-04-07 16:20:03 -04:00