Dannon Baker 832d0c7985 Merged in nsoranzo/galaxy-central (pull request #312) ...

Remove unused imports and unused variables. Fix spacing.

2014-02-04 10:33:40 -05:00

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annotation_profiler

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data_source

Remove broken and/or obsolete tools.

2014-01-27 13:58:31 -05:00

evolution

Migrate tools from the distribution to the tool shed, including but not limited to samtools and fastx_toolkit tools.

2013-09-26 10:05:00 -04:00

extract

Remove broken and/or obsolete tools.

2014-01-27 13:58:31 -05:00

fasta_tools

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filters

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

gatk

Enhance GATK tools to utilize GALAXY_SLOTS configuration when available.

2013-11-05 13:46:06 -06:00

genomespace

Merge.

2014-01-10 07:40:02 -05:00

maf

Make maf-to-bed object-store aware

2013-03-06 12:40:31 -05:00

meme

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metag_tools

Enhance megablast to utilize GALAXY_SLOTS configuration when available.

2013-11-05 13:46:06 -06:00

multivariate_stats

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mutation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

new_operations

Remove broken and/or obsolete tools.

2014-01-27 13:58:31 -05:00

next_gen_conversion

Fixed error in solid2fasta.xml preventing help text from displaying.

2012-09-04 10:15:18 -04:00

ngs_simulation

Prevent no choice in multiple selections.

2013-09-18 14:43:59 +02:00

phenotype_association

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00

plotting

Merged in abrenner/galaxy-central (pull request #215)

2013-10-16 22:12:40 -05:00

regVariation

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

solid_tools

Fix tool tip for compute quality statistics

2013-03-19 12:04:24 -04:00

sr_assembly

Add <version_command>.

2013-12-20 10:58:08 +01:00

sr_mapping

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00

stats

Fix for aggregate_scores_in_intervals.py broken in 95bf71620d50c6d81248eef2001a7dc156ae1088.

2014-01-27 09:54:34 -05:00

validation

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visualization

Migrate 43 tools from the distribution to the tool shed.

2014-01-27 09:53:14 -05:00