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Daniel Blankenberg
8c075e0d70
It seems wrapping the object/applet in a div tag was the solution to preventing FireFox from crashing.
40 lines
2.1 KiB
Python
40 lines
2.1 KiB
Python
#post processing, add sequence and additional annoation info if available
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from urllib import urlencode
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from galaxy.datatypes.images import create_applet_tag_peek
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def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):
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primary_data = out_data.items()[0][1]
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#default params for LAJ type
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params = {
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"alignfile1": "display?id=%s" % primary_data.id,
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"buttonlabel": "Launch LAJ",
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"title": "LAJ in Galaxy",
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"posturl": "history_add_to?%s" % urlencode( { 'history_id': primary_data.history_id, 'ext': 'lav', 'name': 'LAJ Output', 'info': 'Added by LAJ', 'dbkey': primary_data.dbkey } )
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}
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for name,data in inp_data.items():
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if name == "maf_input":
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params["alignfile1"] = "display?id=%s" % data.id
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elif name == "seq_file1" and data.state == data.states.OK and data.has_data():
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params["file1seq1"] = "display?id=%s" % data.id
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elif name == "seq_file2" and data.state == data.states.OK and data.has_data():
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params["file1seq2"] = "display?id=%s" % data.id
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elif name == "exonfile" and data.state == data.states.OK and data.has_data():
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params["exonfile"] = "display?id=%s" % data.id
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elif name == "repeatfile" and data.state == data.states.OK and data.has_data():
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params["repeatfile"] = "display?id=%s" % data.id
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elif name == "annotationfile" and data.state == data.states.OK and data.has_data():
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params["annotationfile"] = "display?id=%s" % data.id
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elif name == "underlayfile" and data.state == data.states.OK and data.has_data():
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params["underlayfile"] = "display?id=%s" % data.id
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elif name == "highlightfile" and data.state == data.states.OK and data.has_data():
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params["highlightfile"] = "display?id=%s" % data.id
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if "file1seq1" not in params and "file1seq2" not in params:
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params["noseq"] = "true"
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class_name = "edu.psu.cse.bio.laj.LajApplet.class"
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archive = "/static/laj/laj.jar"
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primary_data.peek = create_applet_tag_peek( class_name, archive, params )
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primary_data.flush()
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