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Sergey Golitsynskiy 92b2e67145 Apply black, isort (squashed) 
Squashed:
- pick 8a26c3c7af Fix import order in config
- squash ebe36de5fc Apply black, isort
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api
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auth
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cleanup_datasets
Merge branch 'release_22.01' into dev
2022-03-04 17:02:22 +00:00
grt
Merge branch 'release_22.01' into dev
2022-03-02 20:08:55 +00:00
interactivetools
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loc_files
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metagenomics
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microbes
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objectstore
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slideshow
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taxonomy
Tweaks to taxonomy tools
2010-11-15 15:04:59 -05:00
tool_shed
Add create/migrate scripts for Alembic dbs (squashed)
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tools
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__init__.py
Adding db_shell.py that can be used to simplify writing command line
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apply_tags.py
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bootstrap_history.py
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build_toolbox.py
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celery_shell.py
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check_eggs.py
Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run
2015-11-06 11:06:11 -05:00
check_model.py
Update db index testing: test both models, gxy and tsi
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check_python.py
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common_startup_functions.sh
Don't escape quotes
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common_startup.sh
Merge pull request #13358 from mvdbeek/codecoverage
2022-02-18 17:02:50 +01:00
config_sample_to_kwalify.py
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create_db.py
Add create/migrate scripts for Alembic dbs (squashed)
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create_toolshed_db.py
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cwl_conformance_to_test_cases.py
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db_shell.py
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docker_swarm_manager.py
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drmaa_external_killer.py
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drmaa_external_runner.py
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dump_library_paths.py
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edam_mapping.py
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external_chown_script.py
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extract_dataset_part.py
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extract_toolbox_sections.py
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fetch_eggs.py
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fix_dm_versions.py
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functional_tests.py
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galaxy
Make Galaxy installable the Pythonic way via setup.py. Incomplete, but
2016-07-07 13:49:27 -04:00
galaxy_main.py
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galaxy_schemadisp.py
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galaxy-main
Adjust galaxy-main script so we can import from it for easy app setup
2020-12-22 11:18:00 +01:00
get_uwsgi_args.py
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helper.py
Merge branch 'release_22.01' into dev
2022-03-02 20:08:55 +00:00
maintenance.sh
Fix issues reported by ShellCheck
2019-06-13 12:53:26 +01:00
manage_db_adapter.py
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manage_db.py
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manage_tool_dependencies.py
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migrate_db.py
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migrate_toolshed_db.py
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pages_identifier_conversion.py
Merge branch 'release_22.01' into dev
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paster.py
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patch.sh
Add the script I used to create security patches
2016-02-24 16:54:30 -05:00
plugin_staging.py
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release-diff.py
Merge branch 'release_22.01' into dev
2022-03-04 17:02:22 +00:00
release.sh
Test Galaxy release script
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resumable_upload.py
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rst2html.py
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runtime_stats.py
Merge branch 'release_22.01' into dev
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secret_decoder_ring.py
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set_dataset_sizes.py
Merge branch 'release_22.01' into dev
2022-03-02 20:08:55 +00:00
set_user_disk_usage.py
Merge branch 'release_22.01' into dev
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summarize_timings.py
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tests_markdown_compare.tpl
Performance metrics for tests.
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tests_markdown.py
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tests_markdown.tpl
Performance metrics for tests.
2021-02-12 20:44:05 -05:00
update_cwl_conformance_tests.sh
Add CWL conformance API tests
2021-11-23 14:10:21 +00:00
update_shed_config_path.py
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validate_tools.sh
Switch to lxml for xml parsing
2020-05-12 15:00:27 +02:00