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133 lines
4.7 KiB
Python
133 lines
4.7 KiB
Python
#!/usr/bin/env python
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"""Test driver for many Galaxy Python functional tests.
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Launch this script by running ``run_tests.sh`` from GALAXY_ROOT, see
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that script for a list of options.
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"""
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import os
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import os.path
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import sys
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import tempfile
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galaxy_root = os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir))
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sys.path[1:1] = [ os.path.join( galaxy_root, "lib" ), os.path.join( galaxy_root, "test" ) ]
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from base import driver_util
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driver_util.configure_environment()
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log = driver_util.build_logger()
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from base.api_util import get_master_api_key, get_user_api_key
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from galaxy.web import buildapp
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def main():
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"""Entry point for test driver script."""
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# ---- Configuration ------------------------------------------------------
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testing_migrated_tools = _check_arg('-migrated')
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testing_installed_tools = _check_arg('-installed')
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testing_framework_tools = _check_arg('-framework')
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testing_data_manager = _check_arg('-data_managers')
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testing_workflow = _check_arg('-workflow')
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testing_shed_tools = testing_migrated_tools or testing_installed_tools
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datatypes_conf_override = None
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default_tool_conf = None
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if testing_framework_tools:
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default_tool_conf = driver_util.FRAMEWORK_SAMPLE_TOOLS_CONF
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datatypes_conf_override = driver_util.FRAMEWORK_DATATYPES_CONF
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start_server = 'GALAXY_TEST_EXTERNAL' not in os.environ
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galaxy_test_tmp_dir = driver_util.get_galaxy_test_tmp_dir()
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app = None
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server_wrapper = None
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if start_server:
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tempdir = tempfile.mkdtemp( dir=galaxy_test_tmp_dir )
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# Configure the database path.
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galaxy_db_path = driver_util.database_files_path(tempdir)
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galaxy_config = driver_util.setup_galaxy_config(
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galaxy_db_path,
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use_test_file_dir=not testing_shed_tools,
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default_install_db_merged=True,
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default_tool_conf=default_tool_conf,
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datatypes_conf=datatypes_conf_override,
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)
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# ---- Build Application --------------------------------------------------
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app = driver_util.build_galaxy_app(galaxy_config)
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server_wrapper = driver_util.launch_server(
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app,
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buildapp.app_factory,
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galaxy_config,
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)
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log.info("Functional tests will be run against %s:%s" % (server_wrapper.host, server_wrapper.port))
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# ---- Find tests ---------------------------------------------------------
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success = False
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try:
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if testing_shed_tools:
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driver_util.setup_shed_tools_for_test(
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app,
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galaxy_test_tmp_dir,
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testing_migrated_tools,
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testing_installed_tools,
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)
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if testing_workflow:
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import functional.workflow
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functional.workflow.WorkflowTestCase.master_api_key = get_master_api_key()
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functional.workflow.WorkflowTestCase.user_api_key = get_user_api_key()
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if testing_data_manager:
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import functional.test_data_managers
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functional.test_data_managers.data_managers = app.data_managers # seems like a hack...
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functional.test_data_managers.build_tests(
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tmp_dir=galaxy_test_tmp_dir,
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testing_shed_tools=testing_shed_tools,
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master_api_key=get_master_api_key(),
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user_api_key=get_user_api_key(),
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)
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# We must make sure that functional.test_toolbox is always imported after
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# database_contexts.galaxy_content is set (which occurs in this method above).
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# If functional.test_toolbox is imported before database_contexts.galaxy_content
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# is set, sa_session will be None in all methods that use it.
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import functional.test_toolbox
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functional.test_toolbox.toolbox = app.toolbox
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# When testing data managers, do not test toolbox.
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functional.test_toolbox.build_tests(
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app=app,
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testing_shed_tools=testing_shed_tools,
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master_api_key=get_master_api_key(),
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user_api_key=get_user_api_key(),
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)
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success = driver_util.nose_config_and_run()
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except:
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log.exception( "Failure running tests" )
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log.info( "Shutting down" )
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# ---- Tear down -----------------------------------------------------------
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if server_wrapper is not None:
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server_wrapper.stop()
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server_wrapper = None
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driver_util.cleanup_directory(galaxy_test_tmp_dir)
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if success:
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return 0
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else:
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return 1
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def _check_arg( name ):
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try:
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index = sys.argv.index( name )
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del sys.argv[ index ]
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ret_val = True
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except ValueError:
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ret_val = False
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return ret_val
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if __name__ == "__main__":
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sys.exit( main() )
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