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Matthias Bernt
d512049a4a
rename entries such that they are suffixed by the column name (execpt for dbkey). this makes tests more specific, because this ensures that always the correct column is used.
39 lines
1.5 KiB
XML
39 lines
1.5 KiB
XML
<tool id="dbkey_output_action" name="dbkey_output_action" version="0.1.0">
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<command><![CDATA[
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echo foo > '$mapped_reads'
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]]></command>
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<inputs>
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<param name="input" type="data" />
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<param name="index" type="select" label="Using reference genome">
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<options from_data_table="test_fasta_indexes">
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<filter type="data_meta" ref="input" key="dbkey" column="1" />
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<validator type="no_options" message="No reference genome is available for the build associated with the selected input dataset" />
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</options>
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</param>
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</inputs>
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<outputs>
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<data name="mapped_reads" format="txt">
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<actions>
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<action type="metadata" name="dbkey">
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<option type="from_data_table" name="test_fasta_indexes" column="1" offset="0">
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<filter type="param_value" column="0" value="#" compare="startswith" keep="False"/>
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<filter type="param_value" ref="index" column="0"/>
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</option>
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</action>
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</actions>
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</data>
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</outputs>
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<tests>
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<test>
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<param name="input" value="simple_line.txt" dbkey="hg18" />
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<param name="index" value="hg18_value"/>
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<output name="mapped_reads">
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<metadata name="dbkey" value="hg18" />
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<assert_contents>
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<has_text text="foo" />
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</assert_contents>
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</output>
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</test>
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</tests>
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</tool>
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