Files
galaxy/config/plugins/visualizations
Max Schaefer 43ddd47320 Add missing var declarations.
In all these cases, a variable was not declared to be a local using `var` (and hence was implicitly interpreted as a global variable), but all uses of that variable were preceded by a definition within the same function, suggesting that the variable was, in fact, meant to be local, not global.
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Custom visualization plugins
----------------------------

Visualizations can be added to your Galaxy instance by creating
sub-directories, templates, and static files here.

Properly configured and written visualizations will be accessible to
the user when they click the 'visualizations' icon for a dataset
in their history panel.

For more information, see http://wiki.galaxyproject.org/VisualizationsRegistry


Sub-directory structure
-----------------------

In general, sub-directories should follow the pattern:

    my_visualization/
        config/
            my_visualization.xml
        static/
            ... any static files the visualization needs (if any)
        templates/
            ... any Mako templates the visualization needs

The XML config file for a visualization plugin can be validated on the command
line using (from your plugin directory):

    xmllint my_visualization/config/my_visualization.xml --valid --noout