galaxy

api

Tweaks to scripts/api/common.py to fix JSONDecodeError removal and clean up code.

2014-01-15 09:05:38 -05:00

cleanup_datasets

Fix username argument to PostgreSQL connection in pgcleanup.py

2014-01-09 10:46:01 -05:00

data_libraries

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galaxy_messaging

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

loc_files

Fix create_all_fasta_loc to work when inspect_dir is not set.

2012-09-18 20:49:29 -04:00

metagenomics

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microbes

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migrate_tools

Fix description for find_diag_hits.

2014-01-27 10:44:24 -05:00

others

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scramble

Experimental/alpha/in-development/incomplete object store plugin for iRODS. This plugin will probably set your iRODS instance on fire: do not use except in development/testing.

2013-08-28 16:20:19 -04:00

taxonomy

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tool_shed

Rename community_wsgi.ini.sample to be tool_shed_wsgi.ini.sample, run_community.sh to run_tool_shed.sh, and fix references to these files in the code.

2013-03-18 10:24:03 -04:00

tools

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__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

build_toolbox.py

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build_universe_config.py

Improvements to reports management script (run_reports.sh) to enable managing the reports app from CloudMan. These enhancements are all "optional", the default behavior of run_reports.sh is unchanged.

2012-09-21 22:04:15 -05:00

check_eggs.py

minor docstring adds in /scripts

2012-08-03 13:31:48 -04:00

check_galaxy.py

Fix job manager/handler shutdown, functional tests due to referer -> redirect rename, and check_galaxy script for dataset display -> html table change.

2012-04-16 14:56:24 -04:00

check_python.py

Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5

2013-04-09 11:57:38 -04:00

create_db.py

Models: Database migrations for stand-alone tool_shed_install models.

2013-12-05 00:20:54 -06:00

db_shell.py

Models: Introduce real class for app.model (ModelMapping).

2013-12-05 00:20:54 -06:00

dist-scramble.py

minor docstring adds in /scripts

2012-08-03 13:31:48 -04:00

drmaa_external_killer.py

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

drmaa_external_runner.py

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

egg_packager_template.py

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external_chown_script.py

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

extract_dataset_part.py

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

extract_toolbox_sections.py

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fetch_eggs.py

minor docstring adds in /scripts

2012-08-03 13:31:48 -04:00

functional_tests.py

Fix deletion of test methods after tests have been run.

2014-01-16 11:30:25 -05:00

get_platforms.py

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helper.py

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make_egg_packager.py

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manage_db.py

Modles: Clean up stand-alone database scripts.

2013-12-05 00:20:54 -06:00

manage_tools.py

Tools now properly migrated into install_database_connection database...

2013-12-17 11:19:41 -06:00

nosetests.py

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paster.py

core: add PasteDeploy dependency back, used inside Paste#httpserver

2013-02-01 17:30:58 -05:00

rst2html.py

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run_selenium_tests.sh

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scramble.py

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set_dataset_sizes.py

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set_metadata.py

Remove dependency on simplejson; convert everything over to using the json module in the python standard library.

2014-01-10 07:29:05 -05:00

set_user_disk_usage.py

Fix a few postgres dialect renaming misses.

2013-09-26 09:34:27 -04:00

sync_reports_config.py

Improvements to reports management script (run_reports.sh) to enable managing the reports app from CloudMan. These enhancements are all "optional", the default behavior of run_reports.sh is unchanged.

2012-09-21 22:04:15 -05:00

test_dist_egg.py

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transfer.py

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yuicompressor.jar

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