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https://github.com/galaxyproject/galaxy.git
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David LópezandJohn Davis
03d9d12f22
Replace unused tuple value with `_` Co-authored-by: John Davis <jdavcs@gmail.com>
38 lines
1.3 KiB
Python
38 lines
1.3 KiB
Python
import os
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import pytest
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from ._util import (
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assert_realizes_as,
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configured_file_sources,
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find,
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user_context_fixture,
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)
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SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
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FILE_SOURCES_CONF = os.path.join(SCRIPT_DIRECTORY, "basespace_file_sources_conf.yml")
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skip_if_no_basespace_access_token = pytest.mark.skipif(
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not os.environ.get("GALAXY_TEST_BASESPACE_CLIENT_ID")
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or not os.environ.get("GALAXY_TEST_BASESPACE_CLIENT_SECRET")
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or not os.environ.get("GALAXY_TEST_BASESPACE_ACCESS_TOKEN")
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or not os.environ.get("GALAXY_TEST_BASESPACE_TEST_FILE_PATH"),
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reason="GALAXY_TEST_BASESPACE_CLIENT_ID and related vars not set",
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)
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@skip_if_no_basespace_access_token
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def test_file_source():
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user_context = user_context_fixture()
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file_sources = configured_file_sources(FILE_SOURCES_CONF)
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file_source_pair = file_sources.get_file_source_path("gxfiles://test1")
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assert file_source_pair.path == "/"
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file_source = file_source_pair.file_source
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test_file = os.environ.get("GALAXY_TEST_BASESPACE_TEST_FILE_PATH", "")
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res, _ = file_source.list(os.path.dirname(test_file), recursive=False, user_context=user_context)
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a_file = find(res, class_="File", name=os.path.basename(test_file))
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assert a_file
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assert_realizes_as(file_sources, a_file["uri"], "a\n", user_context=user_context)
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