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https://github.com/galaxyproject/galaxy.git
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Nicola Soranzo
3d57c22b63
Also fix Python3 compatibility. Remove unused method galaxy.tools.parameters.sanitize.ToolParameterSanitizer.restore_param() .
53 lines
1.7 KiB
Python
Executable File
53 lines
1.7 KiB
Python
Executable File
#!/usr/bin/env python
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"""
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Renames a dataset file by appending _purged to the file name so that it can later be removed from disk.
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Usage: python rename_purged_datasets.py purge.log
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"""
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from __future__ import print_function
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import os
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import sys
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assert sys.version_info[:2] >= ( 2, 4 )
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def usage(prog):
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print("usage: %s file" % prog)
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print("""
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Marks a set of files as purged and renames them. The input file should contain a
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list of files to be purged, one per line. The full path must be specified and
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must begin with /var/opt/galaxy.
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A log of files marked as purged is created in a file with the same name as that
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input but with _purged appended. The resulting files can finally be removed from
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disk with remove_renamed_datasets_from_disk.py, by supplying it with a list of
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them.
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""")
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def main():
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if len(sys.argv) != 2 or sys.argv == "-h" or sys.argv == "--help":
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usage(sys.argv[0])
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sys.exit()
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infile = sys.argv[1]
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outfile = infile + ".renamed.log"
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out = open( outfile, 'w' )
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print("# The following renamed datasets can be removed from disk", file=out)
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i = 0
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renamed_files = 0
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for i, line in enumerate( open( infile ) ):
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line = line.rstrip( '\r\n' )
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if line and line.startswith( '/var/opt/galaxy' ):
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try:
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purged_filename = line + "_purged"
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os.rename( line, purged_filename )
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print(purged_filename, file=out)
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renamed_files += 1
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except Exception as exc:
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print("# Error, exception " + str( exc ) + " caught attempting to rename " + purged_filename, file=out)
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print("# Renamed " + str( renamed_files ) + " files", file=out)
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if __name__ == "__main__":
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main()
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