Files
galaxy/test/integration/test_pulsar_embedded.py
T
John Chilton 45019c3fbd Move galaxy testing utilities into more sane package structure.
Split test/base into lib/galaxy_test/base and lib/galaxy_test/driver. Dividing things on whether they import galaxy-app code or not - with the goal of a galaxy-test-base package that doesn't depend on galaxy-app and a galaxy-test-driver package that does.

I've been refactoring around this division for a long time. Certain tests (namely the integration tests) always need to bootstrap Galaxy - but the API tests and the Selenium tests should be installable and runnable without Galaxy in the Python environment. So future galaxy-test-api and galaxy-test-selenium packages should have only an optional dependency on galaxy-test-driver.

Properly sturcturing these namespaces is a precursor for real packages on PyPI, clean separation of the tool shed testing code, and cleans up all the flake8 noqa hacks in test/.
2019-11-12 09:03:06 -05:00

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Python

"""Integration tests for the Pulsar embedded runner."""
import os
from galaxy_test.driver import integration_util
SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
EMBEDDED_PULSAR_JOB_CONFIG_FILE = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_job_conf.xml")
class EmbeddedPulsarIntegrationInstance(integration_util.IntegrationInstance):
"""Describe a Galaxy test instance with embedded pulsar configured."""
framework_tool_and_types = True
@classmethod
def handle_galaxy_config_kwds(cls, config):
config["job_config_file"] = EMBEDDED_PULSAR_JOB_CONFIG_FILE
instance = integration_util.integration_module_instance(EmbeddedPulsarIntegrationInstance)
test_tools = integration_util.integration_tool_runner([
"simple_constructs",
"multi_data_param",
"output_filter",
"vcf_bgzip_test",
])