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mvdbeek
8162853207
Introduces galaxy.tool_source_store: a queryable store of parsed, macro-expanded tool sources plus a pre-computed ToolIndex of the metadata batch consumers need (panel section, labels, EDAM, requirements, test counts, shed provenance). - Backends: database (store-owned tool_source_record + tool_index tables, migration f5a73c8b9d12), sqlalchemy (read-only SQLite bundles, e.g. CVMFS-shipped), and a composite that layers named stores over the default with read fall-through. - scripts/tool_source/populate_store.py walks tool_conf files and writes sources + index + whoosh search index; --watch updates the store on file changes and broadcasts reload_tool_source_cache. The populator is the single writer; consumers are read-only. - Per-conf opt-in via store="name" on a toolbox conf root, resolved against the tool_source_stores catalog in galaxy.yml. - The tool_source_record table is deliberately separate from tool_source, whose rows belong to the job-request path and carry a raw-string payload contract. Nothing reads from the store yet — an on-demand-loading toolbox consuming it is follow-up work (#22633). Extracted from that PR.
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Development Documentation
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=========================
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Some specific development topics are documented in depth in this document.
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A broad based and up-to-date overview of the code architecture along with
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detailed information on contributing to Galaxy can be found in the `Code
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Architecture <https://training.galaxyproject.org/training-material/topics/dev/tutorials/architecture/slides.html>`__ slides of Galaxy Training Network.
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A multi-hour long video playlist covering these slides can be found at
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`https://bit.ly/gx-arch-vids <https://bit.ly/gx-arch-vids>`__.
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.. toctree::
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:maxdepth: 1
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schema
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api_guidelines
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database_session_management
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build_a_job_runner
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collection_semantics
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finding_and_improving_slow_code
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data_managers
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data_source
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data_types
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tool_source_storage
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faq
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writing_tests
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debugging_tests
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debugging_galaxy
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debugging_galaxy_slurm
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translating
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create_release
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