mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
30f60493c3
with manual fixes to 3 files to make them compatible with black 22.12.0 . We need to keep black pinned at `<23` until we vendorise `packaging`, since the new version of black depends on `packaging >=22.0` which is the version where `LegacyVersion` (which we use for tool lineages) was removed.
68 lines
2.0 KiB
Python
68 lines
2.0 KiB
Python
import os
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import sys
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from typing import (
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List,
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NamedTuple,
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)
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galaxy_root = os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir + "/" + os.path.pardir))
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sys.path[1:1] = [os.path.join(galaxy_root, "lib"), os.path.join(galaxy_root, "test")]
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import pytest
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from galaxy_test.api._framework import ApiTestCase
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SKIPTEST = os.path.join(os.path.dirname(__file__), "known_broken_tools.txt")
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class ToolTest(NamedTuple):
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tool_id: str
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tool_version: str
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test_index: int
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def get_skiplist():
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with open(SKIPTEST) as skiptest:
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skiplist = [line.strip() for line in skiptest if line.strip() and not line.startswith("#")]
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return skiplist
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def get_cases() -> List[ToolTest]:
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atc = ApiTestCase()
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atc.setUpClass()
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atc.setUp()
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test_summary = atc.galaxy_interactor.get_tests_summary()
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test_cases = []
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for tool_id, summary_dict in test_summary.items():
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for tool_version, tool_dict in summary_dict.items():
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for index in range(tool_dict["count"]):
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test_cases.append(ToolTest(tool_id, tool_version, index))
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atc.tearDown()
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atc.tearDownClass()
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return test_cases
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def cases():
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skiplist = get_skiplist()
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for tool_test in get_cases():
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marks = []
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marks.append(pytest.mark.skipif(tool_test.tool_id in skiplist, reason="tool in skiplist"))
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if "data_manager_" in tool_test.tool_id:
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marks.append(pytest.mark.data_manager(tool_test))
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else:
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marks.append(pytest.mark.tool(tool_test))
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yield pytest.param(tool_test, marks=marks)
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def idfn(val: ToolTest):
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return f"{val.tool_id}/{val.tool_version}-{val.test_index}"
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class TestFrameworkTools(ApiTestCase):
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conda_auto_init = True
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conda_auto_install = True
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@pytest.mark.parametrize("testcase", cases(), ids=idfn)
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def test_tool(self, testcase: ToolTest):
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self._test_driver.run_tool_test(testcase.tool_id, testcase.test_index, tool_version=testcase.tool_version)
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