galaxy

access_libraries.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

bed_convert.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

biomart_test.xml

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

biomart.xml

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

cbi_rice_mart.xml

Add the CBI Rice Mart data source tool to the distribution.

2010-06-04 15:49:58 -04:00

data_source.py

Use os.pardir everywhere instead of '..' .

2015-07-14 16:20:29 +01:00

ebi_sra.xml

Always access EBI SRA via HTTPS.

2014-09-22 11:23:02 -04:00

echo.py

…

echo.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

eupathdb.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

fetch.py

…

fly_modencode.xml

Update default dbkey for fly_modencode.xml and bump version.

2015-05-20 12:39:59 -04:00

flymine_test.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

flymine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

genbank.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

genbank.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

gramene_mart.xml

Enhance tool parameter sanitization. Sanitization rules can now be defined on a per input parameter basis. Resolves ticket #38 and #142 .

2009-12-07 10:19:41 -05:00

hapmapmart.xml

adding hapmapmart.xml to tools/data_source

2010-11-18 10:30:27 -05:00

hbvar_filter.py

Better approach to altering initial content of output dataset if necessary. The upload tool will now call the data type's groom_output_dataset() method ( a better name than before_setting_metadata since it is not related to metadata ). This will now also run on the cluster.

2009-12-08 11:46:13 -05:00

hbvar.xml

Rewrite HbVar datasource tool.

2012-05-04 15:35:51 -04:00

import.py

…

import.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

metabolicmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

microbial_import_code.py

Fix outdated usage of states in microbial dataset post-job hook.

2013-10-10 12:53:10 -04:00

microbial_import.py

…

microbial_import.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

modmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

mousemine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ratmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_archaea.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_filter.py

…

ucsc_proxy.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

ucsc_proxy.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_tablebrowser_archaea.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

ucsc_tablebrowser_test.xml

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

ucsc_tablebrowser.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ucsc_testproxy.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

upload.py

Another fix for 3c40f32fa2 .

2015-06-17 19:21:13 +01:00

upload.xml

datatypes: extracted TabularData superclass from Tabular, CSV subclass

2015-04-30 17:20:32 +02:00

worm_modencode.xml

Update default dbkey for worm_modencode.xml and bump version.

2015-05-20 12:42:05 -04:00

wormbase_test.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

wormbase.xml

Update WormBase datasource tool to use WormBase 2.

2012-05-02 17:04:33 -04:00

yeastmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

zebrafishmine.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00