mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
John Chilton
c5bf63bc91
- Improves options and display around discarded datasets. - Adds new APIs for importing model stores. - Adds support to model store layer for importing/exporting workflow invocations and APIs and tests to support this. - Add new DEFERRED dataset state - with APIs for materializing them or the option to defer them on the worker node if using tool_evaluation_strategy=remote on the job destination. - UI and API options for uploading deferred datasets individually or into collections.
40 lines
1.5 KiB
Python
40 lines
1.5 KiB
Python
import json
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import os
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from galaxy.model.store.load_objects import main
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from galaxy.model.unittest_utils.store_fixtures import (
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history_model_store_dict,
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one_hda_model_store_dict,
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TEST_HISTORY_NAME,
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)
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from galaxy_test.base.populators import DatasetPopulator
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from galaxy_test.driver.integration_util import IntegrationTestCase
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class ModelStoreScriptsIntegrationTestCase(IntegrationTestCase):
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# TODO: test build_objects also...
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def setUp(self):
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super().setUp()
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self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
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self.json_store_path = os.path.join(self._tempdir, "store.json")
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def test_import_contents_from_json(self):
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self._write_store_json(one_hda_model_store_dict())
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history_id = self.dataset_populator.new_history()
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script_args = ["-t", history_id, "-u", self.url, "-k", self.galaxy_interactor.api_key, self.json_store_path]
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main(script_args)
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def test_import_history_from_json(self):
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self._write_store_json(history_model_store_dict())
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script_args = ["-u", self.url, "-k", self.galaxy_interactor.api_key, self.json_store_path]
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history_names = [h["name"] for h in self.dataset_populator.get_histories()]
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assert TEST_HISTORY_NAME not in history_names
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main(script_args)
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history_names = [h["name"] for h in self.dataset_populator.get_histories()]
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assert TEST_HISTORY_NAME in history_names
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def _write_store_json(self, as_dict) -> None:
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with open(self.json_store_path, "w") as f:
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json.dump(as_dict, f)
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