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Greg Von Kuster
22 lines
1016 B
Plaintext
22 lines
1016 B
Plaintext
#This is a sample file distributed with Galaxy that is used by the
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#phastOdds scores tool. The phastOdds.loc file has this format (white space
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#characters are TAB characters):
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#
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#<build> <description> <path to phastOdds score files>
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#
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#So, for example, if you had hg17 ENCODE regions only, SEP-2005 tba.v2 alignments
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#stored in /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds,
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#then the phastOdds.loc entry would look like this:
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#
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#hg17 ENCODE regions only, SEP-2005 tba.v2 alignments /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds
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#
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#and your /depot/data2/galaxy/phastOdds_precomputed/ directory would
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#contain all of your alignment files (e.g.):
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#
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#-rw-r--r-- 1 james g2cache 56555036 2006-02-22 18:26 encode_SEP-2005_tba.v2_phastOdds.h5
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#-rw-r--r-- 1 james g2cache 1367 2006-02-08 12:23 encode_SEP-2005_tba.v2_phastOdds.mapping.bed
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#...etc...
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#
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#Your phastOdds.loc file should include an entry per line for each phastOdds
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#file you have stored.
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