Daniel BlankenbergandNicola Soranzo a2199ee575 Update scripts/interactivetools/key_type_token_mapping.py ...

Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>

2019-08-23 11:29:36 -04:00

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api

Use `yaml.safe_load() instead of load()`

2019-04-23 16:50:55 +01:00

auth

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cleanup_datasets

Merge pull request #8470 from erasche/fix-975

2019-08-16 14:42:24 -04:00

communication

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

grt

swap to exception

2019-04-26 13:29:12 +02:00

interactivetools

Update scripts/interactivetools/key_type_token_mapping.py

2019-08-23 11:29:36 -04:00

loc_files

Replace deprecated xml.etree.ElementTree.Element.getiterator() with iter()

2018-09-18 10:06:13 +01:00

metagenomics

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microbes

Change all remaining old-style classes to new style

2018-09-17 12:26:07 +01:00

slideshow

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taxonomy

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tool_shed

Update import paths for loader_directory

2019-07-06 00:52:45 +02:00

tools

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__init__.py

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apply_tags.py

Change all remaining old-style classes to new style

2018-09-17 12:26:07 +01:00

bootstrap_history.py

Fixes and enhancements for release note generation.

2019-05-24 16:59:32 -04:00

build_toolbox.py

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check_eggs.py

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check_python.py

Drop support for Python 3.4. Officially support Python >=3.5

2019-01-31 23:31:44 +00:00

common_startup_functions.sh

Fix startup checks when using a Conda env

2019-08-19 01:28:35 +01:00

common_startup.sh

Merge pull request #8474 from bgruening/node-conda

2019-08-20 11:36:38 -04:00

config_sample_to_kwalify.py

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create_db.py

Enable on-screen logging for create_db.py and manage_db.py

2019-08-18 11:17:34 +01:00

db_shell.py

Fix traceback in `printquery()`

2019-06-11 11:31:40 +01:00

docker_swarm_manager.py

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drmaa_external_killer.py

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drmaa_external_runner.py

external_runner: load json template first

2018-11-09 17:48:36 +01:00

dump_library_paths.py

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edam_mapping.py

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external_chown_script.py

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extract_dataset_part.py

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extract_toolbox_sections.py

Fix deprecated `getchildren()`

2019-04-23 12:51:13 +01:00

fetch_eggs.py

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functional_tests.py

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galaxy

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galaxy-main

Fix missed control_worker->queue_worker rename

2019-08-22 10:58:01 +02:00

get_platforms.py

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get_uwsgi_args.py

Drop static-safe navigation to plugin dirs. These are no longer symlinks, they are staged files.

2019-03-14 13:23:45 -04:00

helper.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

maintenance.sh

Fix issues reported by ShellCheck

2019-06-13 12:53:26 +01:00

manage_db.py

Enable on-screen logging for create_db.py and manage_db.py

2019-08-18 11:17:34 +01:00

manage_tool_dependencies.py

Rework config locating logic (it was reading the sample again).

2019-07-08 11:28:31 +02:00

nosetests.py

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pages_identifier_conversion.py

clean-fix-page-api - move page revision creation to manager.

2019-05-29 13:43:49 -04:00

paster.py

Remove log_tempfile.

2019-07-08 14:52:13 +02:00

patch.sh

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plugin_staging.py

Update plugin_staging to actually stage instead of symlink, since it no longer needs to be quite as fast (on startup). This will allow us to drop unnecessary trust rules from uwsgi static.

2019-03-14 13:18:43 -04:00

rst2html.py

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runtime_stats.py

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

secret_decoder_ring.py

Refactor galaxy.web.security into galaxy.security.idencoding.

2019-03-19 14:28:31 -04:00

set_dataset_sizes.py

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set_user_disk_usage.py

Refactor into model

2019-08-14 16:15:49 +02:00

summarize_timings.py

Fix errors reported by flake8 3.6.0

2018-10-24 23:22:19 +01:00

update_shed_config_path.py

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validate_tools.sh

Fix issues reported by ShellCheck

2019-06-13 12:53:26 +01:00